Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03916 ATGTTGCGTGAACATCTTTATCCACTTGTGGACCATCTTACACTTAACCATCAGACAGCAAAGGTGACTGGAACTTTGCTGGAAATGGACCAGTCAGAGGTAATCCATTTGATTGAATCTCCTGAGGACTTGAAGAAAAAGGTGTTTGAGGCAATGCAGGTCCTTAATGAAGGTGCATCAGGTTCTGAAGTTGGTGATCAGCTTGGTTGA 210 0.4333 MLREHLYPLVDHLTLNHQTAKVTGTLLEMDQSEVIHLIESPEDLKKKVFEAMQVLNEGASGSEVGDQLG. 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03916 69 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 60 IPR002004 GO:0003723
Seca9g03916 69 SMART poly_2 1 58 IPR002004 GO:0003723
Seca9g03916 69 Gene3D - 1 58 - -
Seca9g03916 69 Pfam Poly-adenylate binding protein, unique domain 1 55 IPR002004 GO:0003723
Seca9g03916 69 SUPERFAMILY PABC (PABP) domain 1 58 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03916 Seca-Chr9 82078150 82078359 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03916 1 69 Eukaryotic Initiation Factors Gene Family AT2G23350 54.167 2.15e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03916 K13126 - gmx:100798998 101.293