Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03915 ATGGAACATCTGAACTTCACTCCTCTAAATGGGAAATCGATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATCAAGAACCTTGACAAATCAATAGATAACAAGGCATTGCATGGCACTTTTGCTGCCTTTGGAACTGTGCTTTCCTATAAGGTGGTTGTGGATAACAGTGGCCAATCAAAAGGATATGGTTATGTGCAGTTTGACAATGAAAAGTCTGCACAGGATTCCATCCAACAATTAAATGGTATGTTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCAGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTCTGAAACATTTACTGATGAGGACCTTAAGGAGCTCTTTGGCACCCATGGTACAATCACTAGTGCTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCAGCTGCTGCAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGAGTTGTTTTCTGAATATGGAACAATCACATCTTGCAAGGTGATGGTCGATTCAAATGGGCATAGCAAGGGCTCTGGTTTTGTTGCCTTCTCTACTCCTGAGGAAGCAAATGAAGTTTTGAATAAAATGAATGGGAAGATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGTAAAGAAGAGAGGAAGGCTTTTCTGCAGGCTCAGTTTTCTCAATTCCAAGCACAAATTGGAATTCCATCTTTCCCTGAGTTTTCTCAATTCCAAGCAGCAAATGGAATTCCATATTTGCCTGAAGGATATCCTGGATATCCATGGGCAACAGGACTTGCCCCTGAACAACATTATTATGATCAAGGCACACCTGGTTTCATTCCAACTCAACCAGCAGGATATGGCTACCAGCAACAATTCTATCCAGGTATGCACCCTGTTGTTGCTCCAAATGCCATTATGCCATACCATCTTCAGAGGCAGGGTCATCCTAGGTAG 1071 0.409 MEHLNFTPLNGKSIRIMFSHRDPSIRKSGYANVFIKNLDKSIDNKALHGTFAAFGTVLSYKVVVDNSGQSKGYGYVQFDNEKSAQDSIQQLNGMLINDKKVYVGSFIRRQERAQANGSPKFTNVYVKNFSETFTDEDLKELFGTHGTITSAVVMKDVNGKSRCFGFVNFESPDSAAAAVERLNGTTTNDEKELFSEYGTITSCKVMVDSNGHSKGSGFVAFSTPEEANEVLNKMNGKMIQGKPLYVAVAQRKEERKAFLQAQFSQFQAQIGIPSFPEFSQFQAANGIPYLPEGYPGYPWATGLAPEQHYYDQGTPGFIPTQPAGYGYQQQFYPGMHPVVAPNAIMPYHLQRQGHPR. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03915 356 SUPERFAMILY RNA-binding domain, RBD 31 189 IPR035979 GO:0003676
Seca9g03915 356 SUPERFAMILY RNA-binding domain, RBD 191 263 IPR035979 GO:0003676
Seca9g03915 356 Gene3D - 189 270 IPR012677 -
Seca9g03915 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 251 IPR000504 GO:0003723
Seca9g03915 356 Gene3D - 106 188 IPR012677 -
Seca9g03915 356 SMART rrm2_1 32 104 IPR003954 GO:0003676
Seca9g03915 356 SMART rrm2_1 123 195 IPR003954 GO:0003676
Seca9g03915 356 Gene3D - 4 103 IPR012677 -
Seca9g03915 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 103 IPR000504 GO:0003723
Seca9g03915 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Seca9g03915 356 SMART rrm1_1 193 247 IPR000504 GO:0003723
Seca9g03915 356 SMART rrm1_1 123 192 IPR000504 GO:0003723
Seca9g03915 356 SMART rrm1_1 32 104 IPR000504 GO:0003723
Seca9g03915 356 CDD RRM2_I_PABPs 29 104 IPR045305 -
Seca9g03915 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 189 IPR000504 GO:0003723
Seca9g03915 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 101 IPR000504 GO:0003723
Seca9g03915 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 244 IPR000504 GO:0003723
Seca9g03915 356 Coils Coil 249 269 - -
Seca9g03915 356 PANTHER RNA BINDING PROTEIN 186 286 - -
Seca9g03915 356 FunFam Polyadenylate-binding protein 25 112 - -
Seca9g03915 356 Gene3D - 27 81 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03915 Seca-Chr9 82058383 82060233 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03915 1 337 Eukaryotic Initiation Factors Gene Family AT4G34110 51.546 1.61e-127 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03915 K13126 - gmx:100783163 489.189