Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03913 ATGGCGAAAATATCACAGAAAGACAATGCAAGCAATATTACTCTAAACGCAACTAACAAGGTGAAACGACCAAGGAAAAGTGTCCCTAGAGACTCCCCACCTAAACGCAGCTCAATATACAGAGGAGTCACTAGGCACCGGTGGACTGGCCGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCGCAGAACAAGAAAGGACGACAAGGTGATTATGACAATGAGGAGGCGGCAGCACATGCTTATGATCTAGCAGCGTTGAAATACTGGGGACAAGATACCATTCTTAATTTTAAGTTATCAGTCTACCAGAATGAACTGAAAGAAATGGAAGGTCAATCAAGGGAGGAGTATATTGGATCACTAAGGAGGTAA 384 0.4323 MAKISQKDNASNITLNATNKVKRPRKSVPRDSPPKRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGDYDNEEAAAHAYDLAALKYWGQDTILNFKLSVYQNELKEMEGQSREEYIGSLRR. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03913 127 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 127 - -
Seca9g03913 127 MobiDBLite consensus disorder prediction 1 21 - -
Seca9g03913 127 ProSiteProfiles AP2/ERF domain profile. 39 102 IPR001471 GO:0003700|GO:0006355
Seca9g03913 127 SMART rav1_2 39 108 IPR001471 GO:0003700|GO:0006355
Seca9g03913 127 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Seca9g03913 127 PRINTS Ethylene responsive element binding protein signature 84 104 IPR001471 GO:0003700|GO:0006355
Seca9g03913 127 MobiDBLite consensus disorder prediction 1 38 - -
Seca9g03913 127 FunFam AP2-like ethylene-responsive transcription factor 38 104 - -
Seca9g03913 127 SUPERFAMILY DNA-binding domain 38 104 IPR016177 GO:0003677
Seca9g03913 127 Pfam AP2 domain 39 94 IPR001471 GO:0003700|GO:0006355
Seca9g03913 127 Gene3D AP2/ERF domain 39 105 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03913 Seca-Chr9 81974119 81974980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03913 15 127 AP2-EREBP Transcription Factor Family AT5G57390 56.897 2.14e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca9g03913 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03913 K09285 - gmx:100793339 211.846