Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca9g03910 | ATGGAAACGATAATCTCTGCACCGAAAATAACGATTCCGGCACATGCAGCATTTAGCGGCGTTCGATTCGAAAATGTGACACTGTATGTTGGGGATCTTGCGGGGAATGTGAACGAGACGCATCTGTATGATCTGTTCAACCAAGTGGCTCAGGTGGTTTCCTCTAGGGTTTGCAGGGATCACACGATGCGATCCTCTCTCGGTTATGCTTATGTGAACTTTGCCAATGCTCAAGATGCAGCTAATGCTATGGAACATCTTAACTTCACTCCTCTGAATGGGAAACCCATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATTAAGAACCTTGACAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGAACTGTGCTTTCCTGTAAGGTGGCTGTGGATAATAGTGGCCAATCAAAAGGATATGGTTATGTGCAGTTTGACAATGAAAAGTCTGCACAGGATTCCATCCAACAGTTAAATGGTATGCTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCAGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAAATTTTCTGAAACATTTACTAATGAGGACCTTAAGGAGCTCTTTGGCACCCATGGTACAATCACTAGTGCTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGATTTGTGAATTTTGAAAGTTCAGATTCAGCAGCTGCTGCAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGGGAAGGGCTCAAAGAAAAGCAGAGAGGAATGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAAGAGATATGAGAAATTGCAACATATCAATTTGTATCTGAAAAACCTTGCTGATAACATTAATGATGGAAAATTGAATGAGCTATTTTCTGAATATGGAACAATCACATCTTGCAAGGTGATGGTCGATTCAAATGGGCATAGCAAGGGCTCTGGTTTTGTTGCCTTCTCTACTCCTGAGGAAGCAAATAAAGCTTTGAGTAAAATGAATGGAAAGATGATTCAAGGGAAGCCTCTGTATATTGCTGTGGCCCAACGCAAAGAAGAGAGGAAGGCTTTTCTGCAGGCCCAGTTTTCTCAATTCCATGCACCAAATGGAATTCCATATTTTTCTGAAGGATATCGTGGATATCCATGGGCAACAGGACTTGCCCCTGAACAACATTATTATGATCAAGGCACACCTGACATGCCAACTCAACCAGCAGGATATGGATACCAGCAACAAATCTATCCAGGTATGCACCCTGTTGTTGCTCCAAATGCCATTATGCCATACCATCTTCAGAGGCAGGGTCATCCTAGGCAGAGGATGGATTATCGTAGAGGTGGAAACCGCCACCACAACTAG | 1470 | 0.4129 | METIISAPKITIPAHAAFSGVRFENVTLYVGDLAGNVNETHLYDLFNQVAQVVSSRVCRDHTMRSSLGYAYVNFANAQDAANAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDKSIDNKALHDTFAAFGTVLSCKVAVDNSGQSKGYGYVQFDNEKSAQDSIQQLNGMLINDKKVYVGSFIRRQERAQANGSPKFTNVYVKKFSETFTNEDLKELFGTHGTITSAVVMKDVNGKSRCFGFVNFESSDSAAAAVERLNGTTTNDEKVLFVGRAQRKAERNAELKAKYEQEKIKRYEKLQHINLYLKNLADNINDGKLNELFSEYGTITSCKVMVDSNGHSKGSGFVAFSTPEEANKALSKMNGKMIQGKPLYIAVAQRKEERKAFLQAQFSQFHAPNGIPYFSEGYRGYPWATGLAPEQHYYDQGTPDMPTQPAGYGYQQQIYPGMHPVVAPNAIMPYHLQRQGHPRQRMDYRRGGNRHHN. | 490 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca9g03910 | 489 | CDD | RRM3_I_PABPs | 204 | 284 | - | - | |
| Seca9g03910 | 489 | Gene3D | - | 307 | 408 | IPR012677 | - | |
| Seca9g03910 | 489 | FunFam | Polyadenylate-binding protein | 292 | 397 | - | - | |
| Seca9g03910 | 489 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 27 | 481 | IPR006515 | GO:0003723 | |
| Seca9g03910 | 489 | Gene3D | - | 21 | 114 | IPR012677 | - | |
| Seca9g03910 | 489 | MobiDBLite | consensus disorder prediction | 469 | 489 | - | - | |
| Seca9g03910 | 489 | SUPERFAMILY | RNA-binding domain, RBD | 196 | 289 | IPR035979 | GO:0003676 | |
| Seca9g03910 | 489 | PANTHER | RNA BINDING PROTEIN | 24 | 88 | - | - | |
| Seca9g03910 | 489 | CDD | RRM2_I_PABPs | 112 | 187 | IPR045305 | - | |
| Seca9g03910 | 489 | FunFam | Polyadenylate-binding protein | 196 | 291 | - | - | |
| Seca9g03910 | 489 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 26 | 104 | IPR000504 | GO:0003723 | |
| Seca9g03910 | 489 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 114 | 186 | IPR000504 | GO:0003723 | |
| Seca9g03910 | 489 | Gene3D | - | 199 | 306 | IPR012677 | - | |
| Seca9g03910 | 489 | Gene3D | - | 115 | 188 | IPR012677 | - | |
| Seca9g03910 | 489 | SMART | rrm2_1 | 115 | 187 | IPR003954 | GO:0003676 | |
| Seca9g03910 | 489 | SMART | rrm2_1 | 206 | 278 | IPR003954 | GO:0003676 | |
| Seca9g03910 | 489 | SMART | rrm2_1 | 310 | 382 | IPR003954 | GO:0003676 | |
| Seca9g03910 | 489 | SMART | rrm2_1 | 27 | 100 | IPR003954 | GO:0003676 | |
| Seca9g03910 | 489 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 205 | 283 | IPR000504 | GO:0003723 | |
| Seca9g03910 | 489 | SUPERFAMILY | RNA-binding domain, RBD | 307 | 406 | IPR035979 | GO:0003676 | |
| Seca9g03910 | 489 | Coils | Coil | 278 | 301 | - | - | |
| Seca9g03910 | 489 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 311 | 379 | IPR000504 | GO:0003723 | |
| Seca9g03910 | 489 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 116 | 184 | IPR000504 | GO:0003723 | |
| Seca9g03910 | 489 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 98 | IPR000504 | GO:0003723 | |
| Seca9g03910 | 489 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 207 | 274 | IPR000504 | GO:0003723 | |
| Seca9g03910 | 489 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 193 | IPR035979 | GO:0003676 | |
| Seca9g03910 | 489 | CDD | RRM4_I_PABPs | 309 | 386 | - | - | |
| Seca9g03910 | 489 | SMART | rrm1_1 | 206 | 279 | IPR000504 | GO:0003723 | |
| Seca9g03910 | 489 | SMART | rrm1_1 | 115 | 187 | IPR000504 | GO:0003723 | |
| Seca9g03910 | 489 | SMART | rrm1_1 | 310 | 382 | IPR000504 | GO:0003723 | |
| Seca9g03910 | 489 | SMART | rrm1_1 | 27 | 100 | IPR000504 | GO:0003723 | |
| Seca9g03910 | 489 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 309 | 386 | IPR000504 | GO:0003723 | |
| Seca9g03910 | 489 | FunFam | Polyadenylate-binding protein | 108 | 195 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca9g03910 | Seca-Chr9 | 81618636 | 81621470 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca9g03910 | 25 | 485 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 57.627 | 0.0 | 543 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca9g03910 | K13126 | - | gmx:100783163 | 707.597 |