Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03909 ATGGCAACGATAATCTCTACACCGAAAATGACGATTCCGGCACATGCAGCATTTAGCGGCGTTCGATTCGAAAATGTGTCACTGTATGTTGGGGATCTTGCGGGGAATGTGAATGAGACGCATCTGTATGATCTGTTCAGCCAAGTGGCTCAGGTGGTTTCCGCTAGGGTTTGCAGGGATCACACGATGCGATCCTCTCTCGGTTATGCTTATGTGAACTTTGCCAATGCTCAAGATGCAGCTAATGCTATGGAACATCTTAACTTCACTCCTCTGAATGGGAAACCCATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATTAAGAACCTTGACAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGAATTGTGCTTTCCTGTAAGGTGGCTGTGGATAATAGTGGCCAATCAAAAGGATATGGTTATGTGCAGTTTGTCAATGAAAAGTCTGCACAGGATTCCATCCAACAGTTAAATGGTATGCTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCAGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTCTGAAACATTTACTAATGAGGACCTTAAGGAGCTCTTTGGCACCCATGGTACAATCACTAGTGTTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCAGCTGCTGCAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGGGAAGGGCTCAAAGAAAAGCAGAGAGGAATGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAAGAGATATGAGAAACTGCAACATGCTAATTTGTATCTGAAAAACCTTGCTGATAACATTAATGATGGAAAATTGAAGGAGCTATTTTCTGAATATGGAACAATCACATCTTGCAAGGTGATGGTCGATTCAAATGGGCATAGCAAGGGCTCTGGTTTTGTTGCCTTCTCTACTCCTGAGGAAGCAAATAAAGCTTTGAGTAAAATGAATGGAAAAATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGCAAAAAAGAGAGGAAGGCTTTTCTGCAGGCTCAGTTTTCTCAATTCCATGCACAAATTGGAATTCCATCTTTCCCTGAGTTTTCTCAATTCCAAGCACCAAATGGAATTCCATATTTTTCTGAAGGATATCGTGGATATCCATGGGCAACAGGACTTGCCCCTGAACAACATTATTATGATCAAGGCACACCTGACATGCCAACTCAACCAGCAGGATATGGCTACCAGCAACAAATCTATCCAGGTATGCACCCTGTTGTTGCTCCAAATGCCATTATGCCATACCATCTTCAGAGGCAGGGTCATCCTAGGCAGAGGATGGATTATCGTAGAGGTGGAAACCGCCACCACAACTAG 1515 0.4145 MATIISTPKMTIPAHAAFSGVRFENVSLYVGDLAGNVNETHLYDLFSQVAQVVSARVCRDHTMRSSLGYAYVNFANAQDAANAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDKSIDNKALHDTFAAFGIVLSCKVAVDNSGQSKGYGYVQFVNEKSAQDSIQQLNGMLINDKKVYVGSFIRRQERAQANGSPKFTNVYVKNFSETFTNEDLKELFGTHGTITSVVVMKDVNGKSRCFGFVNFESPDSAAAAVERLNGTTTNDEKVLFVGRAQRKAERNAELKAKYEQEKIKRYEKLQHANLYLKNLADNINDGKLKELFSEYGTITSCKVMVDSNGHSKGSGFVAFSTPEEANKALSKMNGKMIQGKPLYVAVAQRKKERKAFLQAQFSQFHAQIGIPSFPEFSQFQAPNGIPYFSEGYRGYPWATGLAPEQHYYDQGTPDMPTQPAGYGYQQQIYPGMHPVVAPNAIMPYHLQRQGHPRQRMDYRRGGNRHHN. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03909 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Seca9g03909 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Seca9g03909 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 274 IPR000504 GO:0003723
Seca9g03909 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Seca9g03909 504 CDD RRM2_I_PABPs 112 187 IPR045305 -
Seca9g03909 504 CDD RRM4_I_PABPs 310 386 - -
Seca9g03909 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Seca9g03909 504 Gene3D - 115 188 IPR012677 -
Seca9g03909 504 Gene3D - 290 397 IPR012677 -
Seca9g03909 504 Coils Coil 278 301 - -
Seca9g03909 504 SUPERFAMILY RNA-binding domain, RBD 306 399 IPR035979 GO:0003676
Seca9g03909 504 SMART rrm1_1 27 100 IPR000504 GO:0003723
Seca9g03909 504 SMART rrm1_1 310 382 IPR000504 GO:0003723
Seca9g03909 504 SMART rrm1_1 115 187 IPR000504 GO:0003723
Seca9g03909 504 SMART rrm1_1 206 279 IPR000504 GO:0003723
Seca9g03909 504 CDD RRM3_I_PABPs 204 284 - -
Seca9g03909 504 Gene3D - 22 114 IPR012677 -
Seca9g03909 504 FunFam Polyadenylate-binding protein 19 111 - -
Seca9g03909 504 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 27 496 IPR006515 GO:0003723
Seca9g03909 504 PANTHER RNA BINDING PROTEIN 27 88 - -
Seca9g03909 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 186 IPR000504 GO:0003723
Seca9g03909 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Seca9g03909 504 Gene3D - 189 289 IPR012677 -
Seca9g03909 504 SUPERFAMILY RNA-binding domain, RBD 115 282 IPR035979 GO:0003676
Seca9g03909 504 MobiDBLite consensus disorder prediction 484 504 - -
Seca9g03909 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Seca9g03909 504 SMART rrm2_1 206 278 IPR003954 GO:0003676
Seca9g03909 504 SMART rrm2_1 27 100 IPR003954 GO:0003676
Seca9g03909 504 SMART rrm2_1 115 187 IPR003954 GO:0003676
Seca9g03909 504 SMART rrm2_1 310 382 IPR003954 GO:0003676
Seca9g03909 504 FunFam Polyadenylate-binding protein 112 195 - -
Seca9g03909 504 FunFam Polyadenylate-binding protein 292 397 - -
Seca9g03909 504 SUPERFAMILY RNA-binding domain, RBD 21 106 IPR035979 GO:0003676
Seca9g03909 504 FunFam Polyadenylate-binding protein 196 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03909 Seca-Chr9 81470212 81473052 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03909 25 500 Eukaryotic Initiation Factors Gene Family AT1G71770 56.198 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03909 K13126 - gmx:100783163 706.057