Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03907 ATGACGATTCCGGCACATGCAGCATTTAGCGGCGTTCGATTGGAAAATGTGTCACTGTATGTTGGGGATCTTGAGGGGAATGTGAACGAGACGCATCTGTATGATCTGTTCAGCCAAGTGGCTCAGGTGGTTTCCGCTAGGGTTTGCAGGGATCACACGATGCGATCTTCTCTCGCGACTAATGCTATGGAACATCTTAACTTCACTCCTCTGAATGGGAAACCCATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATTAAGAACCTTGACAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGAACTGTGCTTTCCTGTAAGGTGGCTGTGGATAACAGTGGCGAATCAAAAGGATATGGTTATGTGCAGTTTCACAATGAAAAGTCTGCACAGGATTCCATCCAAAAGTTAAATGGTATGCTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGGCAGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTCTGAATCATTTACTGATGAGGACCTTAAGGAGTTCTTTGGCATCCATGGTACAATCACTAGTGTTGTAGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAAATTCAGCAGCTGCTGCAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGGGAAGGGCTAAAAGAAAAGCAGAGAGGAATGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAAGAGATATGAGAAACTGCAACATGCTAATTTGTATCTGAAAAACCTTGCTGATAACATTAATGATGGAAAATTGAAGGAGCTATTTTCTGAATATGGAACAATCACATCTTGCAAGGTGATGGTCGATTCAAATGGGCATAGCAAGGGCTCTGGTTTTGTTGCCTTCTCTACTCCCGAGGAAGCAAATAAAGTTTTGAATAAAATGAATGGGAAAATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGCAAAGAAGCGAGGAAGGCTTTTCTGCAGGCTCAGTTTTCTCGATTCCAATCACAAATTGGAATTCCATCTTTCCCTGGGTCTTCCCAATTCCAAGCACCAAATGGAATTCCATATTTTCCTGAAGGATATCCATGGGCAACGGGACTTGCCCCTGAACAACAGTATTATGATCAAGGTACACCTGGGTACATGCCAACTCAACCAACAGGATATGGCTACCAGCAACAATTCTATCCAGGTATGCACCCTGTTGTTGCTCCAAATGCCATTATGCCATACCATCTTCAGAGGCAAGGTCATCCTAGGCAGAGGATGGATTATCGTAGAGGTAGAAACTTCCACCACAACCAGATGCAACAACATAACTCTAACCAACGATTTAGAGATAATCAGCGGCGATCTGCATTGCCTAACACACTTGCCTCGACTTTGGCTTCTGCCACACCAGAAAATCAGCGTCTGATGTTGCGTGAACATCTTTATCCACTTGTGGACCATCTTACACTTAACCATCAGACAACAAAGGTGTCTGAGGCAATGCAGGTCCTTAATGAAGGTGCATTAGGTTCTGAAGTTGGTGATCAACTTGGTTGA 1689 0.4186 MTIPAHAAFSGVRLENVSLYVGDLEGNVNETHLYDLFSQVAQVVSARVCRDHTMRSSLATNAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDKSIDNKALHDTFAAFGTVLSCKVAVDNSGESKGYGYVQFHNEKSAQDSIQKLNGMLINDKKVYVGSFIRRQERAQANGSPKFTNVYVKNFSESFTDEDLKEFFGIHGTITSVVVMKDVNGKSRCFGFVNFESPNSAAAAVERLNGTTTNDEKVLFVGRAKRKAERNAELKAKYEQEKIKRYEKLQHANLYLKNLADNINDGKLKELFSEYGTITSCKVMVDSNGHSKGSGFVAFSTPEEANKVLNKMNGKMIQGKPLYVAVAQRKEARKAFLQAQFSRFQSQIGIPSFPGSSQFQAPNGIPYFPEGYPWATGLAPEQQYYDQGTPGYMPTQPTGYGYQQQFYPGMHPVVAPNAIMPYHLQRQGHPRQRMDYRRGRNFHHNQMQQHNSNQRFRDNQRRSALPNTLASTLASATPENQRLMLREHLYPLVDHLTLNHQTTKVSEAMQVLNEGALGSEVGDQLG. 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03907 562 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 262 IPR000504 GO:0003723
Seca9g03907 562 CDD RRM2_I_PABPs 91 166 IPR045305 -
Seca9g03907 562 PANTHER RNA BINDING PROTEIN 27 397 - -
Seca9g03907 562 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 165 IPR000504 GO:0003723
Seca9g03907 562 SUPERFAMILY RNA-binding domain, RBD 14 90 IPR035979 GO:0003676
Seca9g03907 562 SUPERFAMILY PABC (PABP) domain 452 550 IPR036053 GO:0003723
Seca9g03907 562 CDD RRM4_I_PABPs 289 365 - -
Seca9g03907 562 SUPERFAMILY RNA-binding domain, RBD 285 380 IPR035979 GO:0003676
Seca9g03907 562 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 83 IPR000504 GO:0003723
Seca9g03907 562 Gene3D - 12 89 IPR012677 -
Seca9g03907 562 FunFam Polyadenylate-binding protein 271 376 - -
Seca9g03907 562 Gene3D - 92 167 IPR012677 -
Seca9g03907 562 SUPERFAMILY RNA-binding domain, RBD 94 251 IPR035979 GO:0003676
Seca9g03907 562 Coils Coil 260 280 - -
Seca9g03907 562 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 365 IPR000504 GO:0003723
Seca9g03907 562 SMART rrm1_1 18 79 IPR000504 GO:0003723
Seca9g03907 562 SMART rrm1_1 185 258 IPR000504 GO:0003723
Seca9g03907 562 SMART rrm1_1 289 361 IPR000504 GO:0003723
Seca9g03907 562 SMART rrm1_1 94 166 IPR000504 GO:0003723
Seca9g03907 562 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 18 491 IPR006515 GO:0003723
Seca9g03907 562 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Seca9g03907 562 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 56 IPR000504 GO:0003723
Seca9g03907 562 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 253 IPR000504 GO:0003723
Seca9g03907 562 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 358 IPR000504 GO:0003723
Seca9g03907 562 Gene3D - 269 374 IPR012677 -
Seca9g03907 562 Gene3D - 500 541 - -
Seca9g03907 562 SMART rrm2_1 289 361 IPR003954 GO:0003676
Seca9g03907 562 SMART rrm2_1 185 257 IPR003954 GO:0003676
Seca9g03907 562 SMART rrm2_1 94 166 IPR003954 GO:0003676
Seca9g03907 562 FunFam Polyadenylate-binding protein 87 174 - -
Seca9g03907 562 Gene3D - 169 268 IPR012677 -
Seca9g03907 562 CDD RRM3_I_PABPs 183 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03907 Seca-Chr9 81363862 81367214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03907 16 531 Eukaryotic Initiation Factors Gene Family AT1G71770 50.438 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03907 K13126 - gmx:100783163 739.184