Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03899 ATGACAACGGATCTGGAGAACTACAAGAAAAAAGCTGCAATAATAGTGGAAGAATACTTTGCCACTGATGATGTTGTTGCAACAATAAACGAACTTAGAGAACTTGGTAAACCAGAATATAGCTACTATTTTGTCAAAAAGCTTGTCTCTATGTCAATGGACAGACATGACAAAGAAAAAGAAATGGCTGCTATTCTGTTATCTGACCTTTATGCTGACACAATTGACCCTTCACAAGTTTACAAAGGCTTCAGCAAATTGGTTGAATCAGCAGATGACTTGATTGTAGATATACCAGACACAGTTGATATTCTAGCACTTTTCTTAGCTAGAGCTGTGGTTGATGACATCCTTCCTCCTGCATTTTTGAAGAAACAGATGGCCTACTTACCCAAAGATTCTAAAGGTGTTGAGGTCTTGAAGAAAGCTGAGAAAAGCTACCTAGCAGCCCCTCTGCATGCAGAAATCATAGAGAGGCGCTGGGGAGGTAGTAAGAATACAACAGTTGATGATGTGAAGGCTAGGATAAACAATTTCTTGAAGGAGTATGTAGTAAGTGGTGACAAGAAAGAAGCCTTTAGATGCATCAAAGATTTGAAAGTTCCTTTCTTCCATCATGAAATAGTGAAAAGGGCTCTTATAATGGCAATGGAGAGGCGTCAAGCAGAAGCTCCACTACTAGACCTGTTGAAGGAGGCAGCTGAAGAAGGCTTGATTAACTCTAGTCAAATGTCTAAAGGGTTTGGTCGGTTGATTGACACTGTTGATGACTTATCACTTGATATACCAAATGCACGTGGAATACTGCACCAGCTAATGTCTAAAGCAGCATCTGAGGGTTGGTTGTGTGTGTCATCTTTGAAATCACTTTCAGTGGAGCCTGAAAAGAACTCAATAGAAGATAGTGCTGCCAAAAGTTTCAAGATAAAGACTCAGTCCATCATTAAAGAGTACTTCTTATCAGGCGATATATTGGAGGTGAATAGTTGTCTTGAACAAGAGAACAGCAACAACTGTGCTGAACTCAATGCAATCTTTGTTAAAAAACTCATAACCCTGGCAATGGATAGGAAGAATAGAGAGAAGGAAATGGCCTCTGTATTGCTTTCATCTTTGTGTTTCCCAGCTGATGATGTTGTAAGTGGTTTTGTGATGTTGATAGAGTCAGCAGATGACACTGCTCTGGATAATCCAGTTGTTGTTGAAGATCTTGCTATGTTTATAGCTAGAGCAGTAGTGGATGAAGTCCTAGCCCCACAGCATCTTGAAGAGATTGGAACACAGTGTTTGGGGCCAGATTCAATTGGGAGCAAAGTGCTTCAAATGGCAAAGTCATTGCTAAAGGCTAGACTTGCTGGGGAGAGAATCTTGAGGTGTTGGGGTGGTGGGGGAAGCAGCAGGCCTGGATGGGCAGTTGAGGATGTCAAGGACATGATTGGAAAGCTGTTGGAGGAGTATGAGTCTGGAGGTGAAATAAGGGAGGCTTGTCGCTGCATGAAAGAGTTAGGTATGCCATTTTTCCACCATGAGGTTGTTAAGAAAGCTTTGGTGACAATCATTGAAAAGAAGAATGAGAGGTTATGGGGTCTACTCAAGCAGTGTTTTGAATCAGGACTGATAACCATGAATCAAATGGTGAAGGGTTTTGGAAGGGTTGCAGAGTCTCTTGATGACTTGGCTTTGGATGTCCCTGATGCTAAAAATCAGTTTGCATACTATGTTGAAAGAGCAAAGACTGAAGGATGGTTGGACAATTCATTTTGTTTCAGCAATCTGGAACATGCAACAGAGAATGGCACTCACTAA 1806 0.4131 MTTDLENYKKKAAIIVEEYFATDDVVATINELRELGKPEYSYYFVKKLVSMSMDRHDKEKEMAAILLSDLYADTIDPSQVYKGFSKLVESADDLIVDIPDTVDILALFLARAVVDDILPPAFLKKQMAYLPKDSKGVEVLKKAEKSYLAAPLHAEIIERRWGGSKNTTVDDVKARINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAEAPLLDLLKEAAEEGLINSSQMSKGFGRLIDTVDDLSLDIPNARGILHQLMSKAASEGWLCVSSLKSLSVEPEKNSIEDSAAKSFKIKTQSIIKEYFLSGDILEVNSCLEQENSNNCAELNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPADDVVSGFVMLIESADDTALDNPVVVEDLAMFIARAVVDEVLAPQHLEEIGTQCLGPDSIGSKVLQMAKSLLKARLAGERILRCWGGGGSSRPGWAVEDVKDMIGKLLEEYESGGEIREACRCMKELGMPFFHHEVVKKALVTIIEKKNERLWGLLKQCFESGLITMNQMVKGFGRVAESLDDLALDVPDAKNQFAYYVERAKTEGWLDNSFCFSNLEHATENGTH. 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03899 601 SUPERFAMILY ARM repeat 304 464 IPR016024 -
Seca9g03899 601 SUPERFAMILY ARM repeat 471 590 IPR016024 -
Seca9g03899 601 SUPERFAMILY ARM repeat 4 165 IPR016024 -
Seca9g03899 601 Gene3D - 294 450 - -
Seca9g03899 601 Gene3D - 1 148 - -
Seca9g03899 601 ProSiteProfiles MI domain profile. 306 427 IPR003891 -
Seca9g03899 601 PANTHER PROGRAMMED CELL DEATH 4 4 587 IPR039778 GO:0045892
Seca9g03899 601 FunFam programmed cell death protein 4 1 150 - -
Seca9g03899 601 SMART ma3_7 172 283 IPR003891 -
Seca9g03899 601 SMART ma3_7 8 119 IPR003891 -
Seca9g03899 601 SMART ma3_7 307 418 IPR003891 -
Seca9g03899 601 SMART ma3_7 475 584 IPR003891 -
Seca9g03899 601 ProSiteProfiles MI domain profile. 474 593 IPR003891 -
Seca9g03899 601 FunFam programmed cell death protein 4 296 451 - -
Seca9g03899 601 Pfam MA3 domain 9 119 IPR003891 -
Seca9g03899 601 Pfam MA3 domain 173 282 IPR003891 -
Seca9g03899 601 Pfam MA3 domain 476 584 IPR003891 -
Seca9g03899 601 Pfam MA3 domain 308 417 IPR003891 -
Seca9g03899 601 SUPERFAMILY ARM repeat 168 288 IPR016024 -
Seca9g03899 601 Gene3D - 158 290 - -
Seca9g03899 601 Gene3D - 458 590 - -
Seca9g03899 601 ProSiteProfiles MI domain profile. 7 128 IPR003891 -
Seca9g03899 601 ProSiteProfiles MI domain profile. 171 292 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03899 Seca-Chr9 79204707 79209615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03899 466 584 Eukaryotic Initiation Factors Gene Family AT5G57870 31.148 1.32e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03899 - - gmx:102668745 1098.57