Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03894 ATGTTTTCCTCTTCCTCTAGTTATGGATGGAAATATGATGTATTTCTCAACTTTAGAGGCCAAGATACTCGTCATGATTTTACCGGCTATCTTTACAAAGCTCTTCAAGATAGGGGAATCCATACCTTCATGGATGATGACGGTCTTCAAAGAGGGGAGCAAATCACACCATCACTTTTCAAGGCAATTGAGAACTATGCTTCGTCCTCATTTTGTTTAGAAGAACTTGTTAATACTCTTGAGTGCGTGAAGGAAAAAGGTCAGTTGGTTATACCTGTTTTTTATAACGTCGATCCTTCTGATGTGCAGCATCAAAGAGGTAGCTATAAAAAAGCAAATAACAAGGAGAGGGTCCAAAAATGGAGGATGGCTTTGCGTCAAGCAGCTGATTTGTCAGGCTTTCATTTCAAACATGGGAATGAGAATGAATATGAGTTTATTGAAAAGATTGTTAAGGTGGTCTCCGAAAAGATCATTCGCACCCATTTACATGTTGTTGATAACCCAGTTGGGCTAGAGTCTGCAGTGCTACAAGTGCGATCTCTTCTAGGACGTGGGTCTGATGATGTCAACATGGTAGGCATTTATGGCATTGGTGGAATAGGTAAAACAACAATTGCCCGTGCTATTTACAACTTGATTGCTAATCAATTTGAAGGTTCATGTTTTCTGGCTGACATTAGAGAAATGGCAATTAATAAGAATGGCCTTGTGCAACTCCAAGAAATGCTACTTTCTGAAATACTCAGGGAGAATGATATCAAAGTGGGAAATGCCAATCAAGGAATTCCAATAATAAAAAGGAGGCTTCAACAAAAGAAGGTTGTTGGGGATATGATTGGTTTTGGCTCTGGCAGTAAGATCATTATCACAACAAGAGACAAACATTTGCTAGATACTCATGGGGAAAAAGCTCTTGAATTGTTTTGTTGGCATGCCTTTAAAAGTAGTAAAATTGATCCAAGTTATGTGGATATTTCAAACCGTGCAGTTTCTTATGCCTGTGGCCTTCCATTGGCTTTGGAAGTGATAGGTTCTCACTTATTTAGTAAAAGTTTAGTTGAATGTGGTTCAGCATTAGATAAATATGAAAGAGTTCCTCATAAAGAGATCCATGAAATTCTTAAAGTAAGCTATGATGGTTTGGGAGAAGATGAGAAGGGAATTTTCCTTGACATAGCTTGTTTCTTCAATAAATCTGAAATGGACTATGTCAAACAAATGCTACGAGCTCATGGTTTTCATGCAGAAGATGGTATTAGAGAGCTGGCTGACAAATCTCTTATAAAGATTGATGCTATTGGTTTTGTGAGAATGCATGACTTAATTCAAGACATGGGCAGAGAAATTGTGAGGCAAGAATCAACACATGAGCCTGGTGGGCGTAGTAGGTTATGGTTTGAAGAGGATATCGGAACTGATAAAATTGAATTCATAAAGCTTGATCTGGATGCATGCAACAACAAAGAAGTGCAGTGGAGTGAAAAAGCCTTGAAGAAGATGAAAAACTTGAGAATTCTAATTATTGGAAATGCTGTATTTCCAAACATCTACCAAATAATGTTGGAATCCTTAACCTCAGTAAGTTTTGAAGATTGCAAGTTCTTAACTGAACTACCAAGCCTAAGCGCAGCACCATTCTTAACGAATCTTTCCCTTGACAACTGCAGCAATTTAGTTAAAATCGATGATTCAGTTGGGTTTCTTGAGAATCTCCGCTCCTTGAGTGCTGAAGGATGCACTCAGCTAGAAATTCTGCTGCCCTGCATCAAGTTGACATCTCTTGAAATTCTGGATCTCCAAGGCTGCTCAAGCCTTAAGAGATTCCCAGAAGTATTGGAAAAGATGGAGAAAATAAGGGTGATTTATTTAGATCAGACGGCCATAGAGAAATTACCATTTTCAATAGGAAATCTTGTTGGGCTTGAACTATTGTACCTCAAGCAATGCAGAAGGCTTAATCAGCTACCAGCTAGTATCCATCTCTTGCCTAAAGTTGAAGTGATTGTTGGTTTGGGCATGGGGGACTTCGATTATTTGCAGGGTACCAAGAGAAAGAAAAGTTCAGCTCTGAAGTATCTCCAAGTGCCATGCTTGTCTGTGAAGAAGATGGACATTATGATATAA 2127 0.3874 MFSSSSSYGWKYDVFLNFRGQDTRHDFTGYLYKALQDRGIHTFMDDDGLQRGEQITPSLFKAIENYASSSFCLEELVNTLECVKEKGQLVIPVFYNVDPSDVQHQRGSYKKANNKERVQKWRMALRQAADLSGFHFKHGNENEYEFIEKIVKVVSEKIIRTHLHVVDNPVGLESAVLQVRSLLGRGSDDVNMVGIYGIGGIGKTTIARAIYNLIANQFEGSCFLADIREMAINKNGLVQLQEMLLSEILRENDIKVGNANQGIPIIKRRLQQKKVVGDMIGFGSGSKIIITTRDKHLLDTHGEKALELFCWHAFKSSKIDPSYVDISNRAVSYACGLPLALEVIGSHLFSKSLVECGSALDKYERVPHKEIHEILKVSYDGLGEDEKGIFLDIACFFNKSEMDYVKQMLRAHGFHAEDGIRELADKSLIKIDAIGFVRMHDLIQDMGREIVRQESTHEPGGRSRLWFEEDIGTDKIEFIKLDLDACNNKEVQWSEKALKKMKNLRILIIGNAVFPNIYQIMLESLTSVSFEDCKFLTELPSLSAAPFLTNLSLDNCSNLVKIDDSVGFLENLRSLSAEGCTQLEILLPCIKLTSLEILDLQGCSSLKRFPEVLEKMEKIRVIYLDQTAIEKLPFSIGNLVGLELLYLKQCRRLNQLPASIHLLPKVEVIVGLGMGDFDYLQGTKRKKSSALKYLQVPCLSVKKMDIMI. 709
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03894 708 Pfam NB-ARC domain 178 355 IPR002182 GO:0043531
Seca9g03894 708 PRINTS Disease resistance protein signature 192 207 - -
Seca9g03894 708 PRINTS Disease resistance protein signature 334 348 - -
Seca9g03894 708 PRINTS Disease resistance protein signature 590 606 - -
Seca9g03894 708 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 134 IPR035897 -
Seca9g03894 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 393 IPR027417 -
Seca9g03894 708 Gene3D Ribonuclease Inhibitor 445 685 IPR032675 -
Seca9g03894 708 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 667 IPR044974 GO:0006952
Seca9g03894 708 Pfam TIR domain 11 157 IPR000157 GO:0007165
Seca9g03894 708 ProSiteProfiles TIR domain profile. 10 158 IPR000157 GO:0007165
Seca9g03894 708 SMART till_3 11 157 IPR000157 GO:0007165
Seca9g03894 708 SUPERFAMILY "Winged helix" DNA-binding domain 369 471 IPR036390 -
Seca9g03894 708 SUPERFAMILY L domain-like 478 674 - -
Seca9g03894 708 Gene3D - 166 304 IPR027417 -
Seca9g03894 708 Gene3D - 305 383 IPR042197 -
Seca9g03894 708 Gene3D - 6 165 IPR035897 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca9g03894 Seca-Chr9 79039861 79042972 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03894 2 708 WRKY Transcription Factor Family AT4G12020 28.290 2.07e-64 231
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03894 - - gmx:100802408 846.654