Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03887 ATGGCTGGGCAAGCATCAATGATCTCCTCTTCCTTTAGTTATCAATGGAAGTACGACGTATTTCTTAGCTTTAGAGGCATAGATACTCGACATGGTTTTACTGGTTATCTTTACAAAGCTCTCAAAGACAAGGGAATTCACACTTTTATTGATGATGAGGAGCTTCAGAGAGGAGAGCAAATAACACCATCACTTGTCAAGGCAATTGAAGAGTCAAGAATTGCCATTCCTGTGTTCTCTGAGAACTATGCTTCTTCCTCATTTTGCTTAGACGAACTTGTTGTCATCATTGCCTCCATTAAGGAAAAGGGTAGGATGGTTTTGCCAGTCTTTTATGACGTGGATCCTTCTGATGTGCGACATCAGAGAGGTAGCTATATGAAAGCACTAGCTAACCATGAGGAGAGGTTCAAGGATAACAAGGAGAAGGTGAACAAATGGAGGGAGGCTCTGCGTCAAGTGGCTGATTTGTCTGGCTATCATTTAAAAAAACATGGGAATGAGAATGAATATGAGTTTATTGGAAAGATTGTTAAAGGGATCTCTAACAAAATTAATCGTGTTCCTTTACATGTTGCTGATTACCCAATTGGATTGGAGTCTCGAGTACTAAAAGTAAAATCACTACTGTATTTCAAATCTGATGGAGTCCACATGGTAGGGATTCATGGAATTGGTGGAATAGGTAAAACAACAGTTGCTCGACCAGTTTATAATTCGATCGCCGATCAATTCGAAGAACAGTTGCGGGATATAGTTGAAGGACCTGATTGGTTTGGTCCTAGCAGCAGAATCATCATTACAACTCGGGACAAGCATTTGTTGACAAGTCATGGGGTTAATGAAACATATGAGGTAGACGGATTGAATAAGAAAGAAGATCTTGAATTGATCAGTTGGAATGCTTTTAAAACTGACAAAGTTGATCCAAGAAGCTTTGATTCTTTGGAGGAAGATCAACAGAATTTTTTTCTTGATATAGCTTGTTGCTTCAAAGGATATGCTTTGTCATATGTCAAAAAAATACTTTGTGGTCATCATGGTTTCTGCCCAGAATTTGGTATTGGAGTTTTGATTGAAAAGTCTCTCATAAAAATAAATGTGGATGGTCATGTGACATTACATGACTTGATAGAGGACATGGGTAAGGAAATTGTTCGTCAGGAATCCCCAGAAGAGCCTGGAAAACGCAGTAGGTTATGGTTCCCTAATGACATAATTCATGTTTTAGAAGCAAATATGTTTAAGAGTATTGGAATGGTGGAGATATCCATCACCATCTTTACCATCAAATTTTCATCCAAAGAATCTGGTGATATTGGAGTTACCCCAAGGTTGCTTAATGTCACTTTAGTTGCTCATGTCAAACAAGAGATACCTGCAGTGTCTAGTGTCCCAAATTTAGAAGAATTATCATTTGGAAATAGTGAGAATTTAACTAAAATTGACAAATCGGTTGGATTGCTACATAAGCTTAAAATCTTGAATGCTGATGGTTGCAGCAAGCTTAGGAGTTTTCCACCCATCAAGTTGACCTCTCTTCAAAAACTTAGGCTTTCTTATTGTCACAGTCTTGAGAGTTTTCCAGAAATATTAGAAAATATGGAAAAGGTCATGATGCTTGATATCATGGGCACTCCCATGAATGAAATTCCAATTTCAATTCAAAAACTCACTCGACTTCAAAAACTAGCATTGAGGGGTTGTGGAATTGTTGAGTTACCTAGTAGCATTTTCAAGATAATTTCGATTTGCATAAGAAAGGAGGATAAAAATTGTTTCATTTACCAGGAACAAGGATTCCAGAGTGGTTTGAGCACCGTAGCAATGGACCGACAATTTCTTCCTGGTTTTGCAACAAGAACCCCCGTGCCATATGTGTGTGCGTCTGTTACAATCAAAAAAAATTTCATTCAGTCTTCTTTCAATTGGATCGGAAGGCCCACATTTATCATCAATGGCAATGGCAGGACAGACTCAGTAGAAAAAGATGAGTTCAACCCAGACGGCCCGGTAGCAGATTATATATTTATTCGTGATATCAAAAGGTTAAGATTGAAATCACGTAAAGTTCTTTTAGGAGGAAATCAATGGAATCATGTGCAGTGTACAATATCTGGCATCCCAAAAAGATGCTTTGTCAAACAAATTGGAGTCCATGTATTCAAACATACAAGTAGCAAGGAGGACATCCGATTCACCGATCCGTCTTCAGCTTTGAACGATAATATGATAGGTTGGCATCCAGATACAATGCCATCAACTACCACTCCCAGTTTTCAAGACAGTATTCAGTCAAGAAAGAGGAAAGGATGCACGTTAGATTTGGACACAGATGATGAAAACAGTAATGAAATCTCAAGCTCAGACAATGATGATTCTAGTGAAGAAGGTGAAGAAATATTCAGCTCAGACAGTGATGATGCTAGTGAAAGAGGTGAAGAAATCTCAAGCTCAGATAGTGATGGTGCTAGTGAAGAAATCTGA 2487 0.384 MAGQASMISSSFSYQWKYDVFLSFRGIDTRHGFTGYLYKALKDKGIHTFIDDEELQRGEQITPSLVKAIEESRIAIPVFSENYASSSFCLDELVVIIASIKEKGRMVLPVFYDVDPSDVRHQRGSYMKALANHEERFKDNKEKVNKWREALRQVADLSGYHLKKHGNENEYEFIGKIVKGISNKINRVPLHVADYPIGLESRVLKVKSLLYFKSDGVHMVGIHGIGGIGKTTVARPVYNSIADQFEEQLRDIVEGPDWFGPSSRIIITTRDKHLLTSHGVNETYEVDGLNKKEDLELISWNAFKTDKVDPRSFDSLEEDQQNFFLDIACCFKGYALSYVKKILCGHHGFCPEFGIGVLIEKSLIKINVDGHVTLHDLIEDMGKEIVRQESPEEPGKRSRLWFPNDIIHVLEANMFKSIGMVEISITIFTIKFSSKESGDIGVTPRLLNVTLVAHVKQEIPAVSSVPNLEELSFGNSENLTKIDKSVGLLHKLKILNADGCSKLRSFPPIKLTSLQKLRLSYCHSLESFPEILENMEKVMMLDIMGTPMNEIPISIQKLTRLQKLALRGCGIVELPSSIFKIISICIRKEDKNCFIYQEQGFQSGLSTVAMDRQFLPGFATRTPVPYVCASVTIKKNFIQSSFNWIGRPTFIINGNGRTDSVEKDEFNPDGPVADYIFIRDIKRLRLKSRKVLLGGNQWNHVQCTISGIPKRCFVKQIGVHVFKHTSSKEDIRFTDPSSALNDNMIGWHPDTMPSTTTPSFQDSIQSRKRKGCTLDLDTDDENSNEISSSDNDDSSEEGEEIFSSDSDDASERGEEISSSDSDGASEEI. 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03887 828 SMART till_3 17 157 IPR000157 GO:0007165
Seca9g03887 828 MobiDBLite consensus disorder prediction 805 819 - -
Seca9g03887 828 MobiDBLite consensus disorder prediction 744 828 - -
Seca9g03887 828 MobiDBLite consensus disorder prediction 778 804 - -
Seca9g03887 828 SUPERFAMILY L domain-like 374 581 - -
Seca9g03887 828 Pfam TIR domain 17 187 IPR000157 GO:0007165
Seca9g03887 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 327 IPR027417 -
Seca9g03887 828 Gene3D - 11 188 IPR035897 -
Seca9g03887 828 PRINTS Disease resistance protein signature 509 525 - -
Seca9g03887 828 PRINTS Disease resistance protein signature 219 234 - -
Seca9g03887 828 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 187 - -
Seca9g03887 828 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 160 IPR035897 -
Seca9g03887 828 Gene3D Ribonuclease Inhibitor 373 584 IPR032675 -
Seca9g03887 828 Coils Coil 130 150 - -
Seca9g03887 828 Gene3D - 189 252 IPR027417 -
Seca9g03887 828 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Seca9g03887 828 MobiDBLite consensus disorder prediction 748 767 - -
Seca9g03887 828 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 247 307 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03887 Seca-Chr9 78750905 78759136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03887 458 594 WRKY Transcription Factor Family AT5G45050 31.884 1.03e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03887 - - lja:Lj0g3v0355189.1 395.586