Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03874 ATGGCATTGGTTCCAGGGGTTTTTCACACCATTCAAAGTCTCTATGGACGTCGGCAAAATTGGAGGCTGAGGGTGAAGCTGTTAAGGCTCTGGAACATGTGCTCACTTGCGAAACCGAATGATCCATTTGCCTTGGAAATGGTCTTTCTTGATGAAGAGGGGGGGAGGATAGAAGCCACTGTGCCGAAGCACCTGATGAAGAAATTTTCTCAATTTGCTGCGGAGGGTCAGGTTTATAGGCTGTCGAATTTTTCCCTCACCGCGAATTCTGGAAAGTTTCGTGCAGCACACCATGAGCATAAGCTCGTGTTTAATGGAGGCACAAAATTGGTTCTGTGTCCCTCCGTCACCATCCCTTTCTCTGGTTTCTCTTTCATGAAGACTTCAGAGATTAACAAAACTAATGGTGAATGTGATTTTCTATTAGATTTCATGGGGATCCTTACAGCTGTTTCAGAGGAGATAACCATGAAGAAGCAAGGCAGGGAGACAAGGCTGATGCTGCTTGATTTAGTTGATGAAATGGGCTCTATTAGGTGTGCAGTTTTCGGAGACATGGTAGATGTGGTGGCTGGGTTTCTAACTGTCCCAAGGGATGGATTGCCGGTCATTATTATCCAGTTTGCCAAAGTGAATACATATAAAGGCCAAGTTGGAATTCAAAATGTGATGAACGCTACACAAATTTTTTGGAATCCTGATTTCCCAGAGGCAATAGAGTTTAAGAATGGTCTTGCTGTGCATGAAATTGAGAGTGACCTTGCAATTGGATCTATCAGCGACAGATCTCGACAGCTGTCGATGAAAGAAGAGTTCTTGAGTATTTATCCCAGACAGACTGTTGGTAAACTCAGCCTTACCAGTGAGGATGGATTCTCCATTGTTCTTGGTGTTGTTGATGAAGTGCTGCAGGAAGATCATCGGTGGTACATGGCATGTACATGCATGAAAGCTCTAAACTTTGATTATGGCTTACCTTATTGTCGTGATTGTGAAAGAGTTGTTTTTGAAATGACCCCTAGGTTCAAGCTGAAATTACTTGTGACAGATGGAGCTGATTGTGTTGAGGTAATTATGTGGGATTCTGAATGCTTTTCTTTGCTCAACAAAACATGCCGAGAAATACTATCTGAGATTAAGGGGGACCCAACTGAGAACTACCCCTCTGATATCATGGATCTAACAGGCAACGAGTATCTGTTTCGAATAGAGAGGAAGGAAGACCCAACGTATGGATTTGATCAGTGTTATAGTGTGAAGAGGATTTGTTCTGATGAAAGTGTGATTGAAGAGTTCAAAGGATGA 1305 0.4291 MALVPGVFHTIQSLYGRRQNWRLRVKLLRLWNMCSLAKPNDPFALEMVFLDEEGGRIEATVPKHLMKKFSQFAAEGQVYRLSNFSLTANSGKFRAAHHEHKLVFNGGTKLVLCPSVTIPFSGFSFMKTSEINKTNGECDFLLDFMGILTAVSEEITMKKQGRETRLMLLDLVDEMGSIRCAVFGDMVDVVAGFLTVPRDGLPVIIIQFAKVNTYKGQVGIQNVMNATQIFWNPDFPEAIEFKNGLAVHEIESDLAIGSISDRSRQLSMKEEFLSIYPRQTVGKLSLTSEDGFSIVLGVVDEVLQEDHRWYMACTCMKALNFDYGLPYCRDCERVVFEMTPRFKLKLLVTDGADCVEVIMWDSECFSLLNKTCREILSEIKGDPTENYPSDIMDLTGNEYLFRIERKEDPTYGFDQCYSVKRICSDESVIEEFKG. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03874 434 SUPERFAMILY Nucleic acid-binding proteins 123 246 IPR012340 -
Seca9g03874 434 Pfam Domain of unknown function DUF223 46 115 IPR003871 -
Seca9g03874 434 Gene3D - 117 251 IPR012340 -
Seca9g03874 434 SUPERFAMILY Nucleic acid-binding proteins 8 116 IPR012340 -
Seca9g03874 434 CDD RPA1_DBD_A_like 22 109 - -
Seca9g03874 434 Gene3D - 7 113 IPR012340 -
Seca9g03874 434 Pfam Replication factor-A C terminal domain 296 408 IPR013955 -
Seca9g03874 434 CDD RPA1_DBD_B_like 143 242 - -
Seca9g03874 434 Gene3D - 264 428 IPR012340 -
Seca9g03874 434 SUPERFAMILY Nucleic acid-binding proteins 285 420 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03874 Seca-Chr9 76790243 76793089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03874 49 242 Core DNA Replication Machinery Family AT2G06510 31.343 7.74e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03874 - - lja:Lj6g3v0884310.1 352.443