Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03870 ATGCAGGAAAAGGTCTTCACAATACAAGTACTCATCAATCAAATAGATGACACATTTTGTTGGAGCTATATTGCATGTGAAAAATGCTTCAAGAAATTTCACGAAGGAAAAAATGATTACTTATGCACTACATGTAACCATACATCCAAGTACCCAACCAGAAGGTACATGATACAAATGAAGGCTTCAGACAACACGGGATCCGCAAAGTTGACATTGTTTGATCGAGATGCTAAGCAACTACTGAACACAACAACAGCTGAACTATTTTCCCAAGAAATTGAAAATGGTGCAAAACTACCTCAAAAGATACAAAACCTCTGCAACCGCCCCCTTATATTTGAAATCAAATTGACTGATTACAACCTAAAGCAAGGTTCTCAAAATTACACAGTCTCTAAAACATTTGTCCCTAACAATAGCCGACATGATCAAGTTCTACAAAAGACAATCAAACAGGTAACAACAAACCTTATTTTTTAA 483 0.3582 MQEKVFTIQVLINQIDDTFCWSYIACEKCFKKFHEGKNDYLCTTCNHTSKYPTRRYMIQMKASDNTGSAKLTLFDRDAKQLLNTTTAELFSQEIENGAKLPQKIQNLCNRPLIFEIKLTDYNLKQGSQNYTVSKTFVPNNSRHDQVLQKTIKQVTTNLIF. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03870 160 Gene3D - 1 154 IPR012340 -
Seca9g03870 160 CDD RPA1_DBD_C 1 134 IPR047192 -
Seca9g03870 160 PANTHER OS03G0429900 PROTEIN 3 143 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca9g03870 160 SUPERFAMILY Nucleic acid-binding proteins 5 153 IPR012340 -
Seca9g03870 160 Pfam Replication factor-A C terminal domain 6 134 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03870 Seca-Chr9 76085878 76086430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03870 17 97 Core DNA Replication Machinery Family AT5G08020 31.707 5.00e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03870 - - lja:Lj6g3v1370730.1 177.563