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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Seca9g03857
ATGAAGGGTCGAAGAAAATGGGAAGGCAATGAGGGCTCAACCATTGAGGCAACAATCCAGAAACATCTTATGAACAAGTTCGTGAATGCAGTGGAGGGAGAAGTCTACAAGCTGACCAACTTCGGAGTGACGGACAACTCAGGCAAATTTAGAGCTGCTATCCATGATTTCAAGCTTGTGTTTAATGCGAGCACAAAGATGGTCCCTTTCCCAGCCGCAACTATTCCTTCATTGGGATTGTCACTGCTGAAGACTTCTGATATACCAAAGACCAATGGACGGTCCGACTACCTTCTAGTCTCTGAGGAGATGATCCTCAGCAAGGAACGTCGCCAAACACGAATGATGTTGCTAGACTTGGTGGATGAAATGGGTGAGGTGCGATGTGCGCTGTTTGGAGATTTGATAGATGTGGTGGATGGACACCTAGCAGTTACAAGCATAGGTCTCCCCGTAGTTGTTATACAGCTGGCGAGGGTTAACTTCTACAAGGTTTATTTTCGAACTTTGATTTTCTCAAGGCAAGTTGGTATTCAGAATGCTATGAATGCTTCAAAGATTACCTGGAATCCAGACTGGCCTGAAGCTATAGAATTCAAAAACGGCCTTGTTGTGCATGAGGCCGAATCTGATGTGCGCATCCGAAACTTAACAGATAGGGGTCGTCCTCTTTCTATTCGTGAAGAGTTTCTTGAACTCTACCCTCGGAAGACTCTTAGACAGCTTGTGGAGACCCTAGAGGACGCAGATTTCATTGTCTCATGCACTGTTTCTGAGGTTGTGCAGGAGAAGTCTTGGTGGTACATGGCATGCCCATGCATGAAAGCTATTTCTTACGCAACAGGCGTGCCTTACTGTAAAGATTGTCAAACTATTGTCATTGATATGACCCTGAGGTACAAGCTGAAGGTTTTTGTTTCTGACGGGGAAGACAGTGCTCAAGTTATAATGTTTGATAACCCATGCTTCACTATGCTGAATAAACCTTGCAAGGAATTGGTTGCTGACACGAAGGGCCTGCCGTGTGGCGAATATCCTGAGGAGATTAAAAACTTGGTGGGAAAGGAGTTTCTGTTTCGACTTGAGAAGAAGGAGGACATGGTGTTTAGCTTGGATGAATCTTATTGTTGTAGAAGAGTGTGCTCTGATAGCTCCATAATTGCAGAATTCAAGGAAGAAGTAGATAAGGACACACCTTTAAAGCTGAAATTCACCCCTGCATTTACCAAGATAGCCCAGATAGAAGGAGAAAGCTCTGCTAACACCGAAACACCCCGCTCTACTTCTATTGTTACTGTCCTTGATGTTTCTCCTAATTCATGCGCACCCCCTTCGTCCTCAGCTGAGCTTTAA
1353
0.4486
MKGRRKWEGNEGSTIEATIQKHLMNKFVNAVEGEVYKLTNFGVTDNSGKFRAAIHDFKLVFNASTKMVPFPAATIPSLGLSLLKTSDIPKTNGRSDYLLVSEEMILSKERRQTRMMLLDLVDEMGEVRCALFGDLIDVVDGHLAVTSIGLPVVVIQLARVNFYKVYFRTLIFSRQVGIQNAMNASKITWNPDWPEAIEFKNGLVVHEAESDVRIRNLTDRGRPLSIREEFLELYPRKTLRQLVETLEDADFIVSCTVSEVVQEKSWWYMACPCMKAISYATGVPYCKDCQTIVIDMTLRYKLKVFVSDGEDSAQVIMFDNPCFTMLNKPCKELVADTKGLPCGEYPEEIKNLVGKEFLFRLEKKEDMVFSLDESYCCRRVCSDSSIIAEFKEEVDKDTPLKLKFTPAFTKIAQIEGESSANTETPRSTSIVTVLDVSPNSCAPPSSSAEL.
451
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Seca9g03857
450
Gene3D
-
8
71
IPR012340
-
Seca9g03857
450
Pfam
Replication factor-A C terminal domain
251
367
IPR013955
-
Seca9g03857
450
Gene3D
-
231
382
IPR012340
-
Seca9g03857
450
SUPERFAMILY
Nucleic acid-binding proteins
234
368
IPR012340
-
Seca9g03857
450
Pfam
Domain of unknown function DUF223
10
67
IPR003871
-
Seca9g03857
450
SUPERFAMILY
Nucleic acid-binding proteins
108
201
IPR012340
-
Seca9g03857
450
CDD
RPA1_DBD_A_like
11
67
-
-
Seca9g03857
450
Gene3D
-
75
211
IPR012340
-
Seca9g03857
450
CDD
RPA1_DBD_C
241
366
IPR047192
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Seca9g03857
Seca-Chr9
75524806
75527806
Dispersed/Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Seca9g03857
11
366
Core DNA Replication Machinery Family
AT5G45400
20.627
3.15e-07
50.8
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Seca9g03857
-
-
lja:Lj1g3v3385890.1
304.679
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