Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03857 ATGAAGGGTCGAAGAAAATGGGAAGGCAATGAGGGCTCAACCATTGAGGCAACAATCCAGAAACATCTTATGAACAAGTTCGTGAATGCAGTGGAGGGAGAAGTCTACAAGCTGACCAACTTCGGAGTGACGGACAACTCAGGCAAATTTAGAGCTGCTATCCATGATTTCAAGCTTGTGTTTAATGCGAGCACAAAGATGGTCCCTTTCCCAGCCGCAACTATTCCTTCATTGGGATTGTCACTGCTGAAGACTTCTGATATACCAAAGACCAATGGACGGTCCGACTACCTTCTAGTCTCTGAGGAGATGATCCTCAGCAAGGAACGTCGCCAAACACGAATGATGTTGCTAGACTTGGTGGATGAAATGGGTGAGGTGCGATGTGCGCTGTTTGGAGATTTGATAGATGTGGTGGATGGACACCTAGCAGTTACAAGCATAGGTCTCCCCGTAGTTGTTATACAGCTGGCGAGGGTTAACTTCTACAAGGTTTATTTTCGAACTTTGATTTTCTCAAGGCAAGTTGGTATTCAGAATGCTATGAATGCTTCAAAGATTACCTGGAATCCAGACTGGCCTGAAGCTATAGAATTCAAAAACGGCCTTGTTGTGCATGAGGCCGAATCTGATGTGCGCATCCGAAACTTAACAGATAGGGGTCGTCCTCTTTCTATTCGTGAAGAGTTTCTTGAACTCTACCCTCGGAAGACTCTTAGACAGCTTGTGGAGACCCTAGAGGACGCAGATTTCATTGTCTCATGCACTGTTTCTGAGGTTGTGCAGGAGAAGTCTTGGTGGTACATGGCATGCCCATGCATGAAAGCTATTTCTTACGCAACAGGCGTGCCTTACTGTAAAGATTGTCAAACTATTGTCATTGATATGACCCTGAGGTACAAGCTGAAGGTTTTTGTTTCTGACGGGGAAGACAGTGCTCAAGTTATAATGTTTGATAACCCATGCTTCACTATGCTGAATAAACCTTGCAAGGAATTGGTTGCTGACACGAAGGGCCTGCCGTGTGGCGAATATCCTGAGGAGATTAAAAACTTGGTGGGAAAGGAGTTTCTGTTTCGACTTGAGAAGAAGGAGGACATGGTGTTTAGCTTGGATGAATCTTATTGTTGTAGAAGAGTGTGCTCTGATAGCTCCATAATTGCAGAATTCAAGGAAGAAGTAGATAAGGACACACCTTTAAAGCTGAAATTCACCCCTGCATTTACCAAGATAGCCCAGATAGAAGGAGAAAGCTCTGCTAACACCGAAACACCCCGCTCTACTTCTATTGTTACTGTCCTTGATGTTTCTCCTAATTCATGCGCACCCCCTTCGTCCTCAGCTGAGCTTTAA 1353 0.4486 MKGRRKWEGNEGSTIEATIQKHLMNKFVNAVEGEVYKLTNFGVTDNSGKFRAAIHDFKLVFNASTKMVPFPAATIPSLGLSLLKTSDIPKTNGRSDYLLVSEEMILSKERRQTRMMLLDLVDEMGEVRCALFGDLIDVVDGHLAVTSIGLPVVVIQLARVNFYKVYFRTLIFSRQVGIQNAMNASKITWNPDWPEAIEFKNGLVVHEAESDVRIRNLTDRGRPLSIREEFLELYPRKTLRQLVETLEDADFIVSCTVSEVVQEKSWWYMACPCMKAISYATGVPYCKDCQTIVIDMTLRYKLKVFVSDGEDSAQVIMFDNPCFTMLNKPCKELVADTKGLPCGEYPEEIKNLVGKEFLFRLEKKEDMVFSLDESYCCRRVCSDSSIIAEFKEEVDKDTPLKLKFTPAFTKIAQIEGESSANTETPRSTSIVTVLDVSPNSCAPPSSSAEL. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03857 450 Gene3D - 8 71 IPR012340 -
Seca9g03857 450 Pfam Replication factor-A C terminal domain 251 367 IPR013955 -
Seca9g03857 450 Gene3D - 231 382 IPR012340 -
Seca9g03857 450 SUPERFAMILY Nucleic acid-binding proteins 234 368 IPR012340 -
Seca9g03857 450 Pfam Domain of unknown function DUF223 10 67 IPR003871 -
Seca9g03857 450 SUPERFAMILY Nucleic acid-binding proteins 108 201 IPR012340 -
Seca9g03857 450 CDD RPA1_DBD_A_like 11 67 - -
Seca9g03857 450 Gene3D - 75 211 IPR012340 -
Seca9g03857 450 CDD RPA1_DBD_C 241 366 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03857 Seca-Chr9 75524806 75527806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03857 11 366 Core DNA Replication Machinery Family AT5G45400 20.627 3.15e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03857 - - lja:Lj1g3v3385890.1 304.679