Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03852 ATGCGCTCTCTCCACCCCCTCGACCTCTCTTCATTCTCAATCTCTACTTTCAGGAAAATGACAGGCACTGAGTATGTGCTCAGTGAAGTTATGGAGCCCCACCTGTTTGTTATTCGCAAGCAAAAGAGGGATAGCCCTGACAAAGTTACACCCATGCTTGCTTATTACGTGGATGAAGCTACCCACAAATTCGATGAGCATGCTCCTCCTTTGGTTAAGCAGGTAGCAAACCAAGCCAAGGATTTGATTCAGGAAGTGACACTTAAAGCTGAGAAAGTTGTGAGTGAGGCTAAATCTGGTGGGGCATGA 309 0.466 MRSLHPLDLSSFSISTFRKMTGTEYVLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVDEATHKFDEHAPPLVKQVANQAKDLIQEVTLKAEKVVSEAKSGGA. 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03852 102 Pfam MED6 mediator sub complex component 17 59 IPR007018 GO:0003712|GO:0006357|GO:0016592
Seca9g03852 102 Gene3D Mediator complex, subunit Med6 1 92 IPR038566 -
Seca9g03852 102 Pfam Rubber elongation factor protein (REF) 41 101 IPR008802 -
Seca9g03852 102 PANTHER MED-6-RELATED 1 59 IPR007018 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03852 Seca-Chr9 75383033 75384642 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Seca9g03852 REF 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03852 K15128 - gmx:100792248 94.3597