Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03839 ATGGAGTTGCTGTCGTCGTTCCTCCGTTCGAGCTCCGTCAAGCTTCCATTCACAGGTTACGCTGTCGTTCGAGCTCCTCCGTTCTGTTCCTCGTTGCTTCCGTTGTCCTCATCTTCTCCGTTCAGGAAAATGACAGGCACTGAGTATGTGCTCAGTGAAGTTATGGAGCCCCACCTGTTTGTTATTCGCAAGCAAAAGAGGGATAGCCCTGACAAAGTTACACCCATGCTTGCTTATTACGTCTTGGATGGGAAGGGCACTCTATTATATACAAAAGGCATTTACTACAACTGCCTCGAAGTTGGAGAAGATAGGATACGTGGTAACCTTTTGTTTTTCACTCTTATCTCAGAGCATGATACTAATGTGGATGAAGCTACCCACAAATTCGATGAGCATGCTCCTCCTTTGGTTAAGCAGGTAGCAAACCAAGCCAAGGATTTGATTCAGGAAGTGACACTTAAAGCTGAGAAAGTTATGAGTGAGGCTAAATCTGGTGGGGCATGA 507 0.4596 MELLSSFLRSSSVKLPFTGYAVVRAPPFCSSLLPLSSSSPFRKMTGTEYVLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGKGTLLYTKGIYYNCLEVGEDRIRGNLLFFTLISEHDTNVDEATHKFDEHAPPLVKQVANQAKDLIQEVTLKAEKVMSEAKSGGA. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03839 168 Coils Coil 142 162 - -
Seca9g03839 168 PANTHER MED-6-RELATED 40 85 IPR007018 GO:0003712|GO:0006357|GO:0016592
Seca9g03839 168 Pfam MED6 mediator sub complex component 41 84 IPR007018 GO:0003712|GO:0006357|GO:0016592
Seca9g03839 168 Gene3D Mediator complex, subunit Med6 21 90 IPR038566 -
Seca9g03839 168 Pfam Rubber elongation factor protein (REF) 119 167 IPR008802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03839 Seca-Chr9 75074897 75077954 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Seca9g03839 REF 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03839 K15128 - gmx:100792248 88.1965