Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03807 ATGGTTGTCCTGGTTTCCTTCTCTGACGTTGGATTCTCTTCCGCCTATGTAGCCGACGTTCTCCGCCCCAAAAACCCGGTTTTCAAACCTGGTTTCCTGCTCCATTGTGGCTGTCCCGCTAATCGCCCTACTCCGTTGTGGAAGTGGATTTTGGCATGGAATGGCCATAAGTGTTTGTGGAAGACTGCTTTTCCAGCTTATTGGTTAGTTGATAGTGAACTCATTGTCCCTAAAAAGAATGATGAGCAAGAAAGGGTAGCCAAAAGTGGGGAAGTGGAGAAGGAGAACTTGGAGGATTCTGAGCTTGAAATTAACAACAATGGGCAACATCCAATTCCAAGGAGGTGCACCCATTGTTTGTCTCAAAGGACCGCACAATGGAGAGCTGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTGTTGCTAGAGTATAGGCCAGCCAAGAGTCCTACTTTTTAA 489 0.4724 MVVLVSFSDVGFSSAYVADVLRPKNPVFKPGFLLHCGCPANRPTPLWKWILAWNGHKCLWKTAFPAYWLVDSELIVPKKNDEQERVAKSGEVEKENLEDSELEINNNGQHPIPRRCTHCLSQRTAQWRAGPLGPKTLCNACGVRYKSGRLLLEYRPAKSPTF. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03807 162 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 110 157 - -
Seca9g03807 162 ProSiteProfiles GATA-type zinc finger domain profile. 114 146 IPR000679 GO:0006355|GO:0043565
Seca9g03807 162 Gene3D - 106 161 IPR013088 GO:0006355|GO:0008270
Seca9g03807 162 PANTHER GATA TRANSCRIPTION FACTOR 111 162 - -
Seca9g03807 162 Pfam GATA zinc finger 116 150 IPR000679 GO:0006355|GO:0043565
Seca9g03807 162 Coils Coil 80 100 - -
Seca9g03807 162 CDD ZnF_GATA 115 162 IPR000679 GO:0006355|GO:0043565
Seca9g03807 162 ProSitePatterns GATA-type zinc finger domain. 116 141 IPR000679 GO:0006355|GO:0043565
Seca9g03807 162 SMART GATA_3 110 160 IPR000679 GO:0006355|GO:0043565
Seca9g03807 162 FunFam GATA transcription factor 111 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03807 Seca-Chr9 73321157 73322449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03807 114 162 C2C2-Gata Transcription Factor Family AT3G60530 83.673 5.71e-25 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca9g03807 GATA 5.9e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03807 - - pvu:PHAVU_004G079200g 156.377