Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03783 ATGCAGCTGGCAAGGGCTCTTGGTTTGCAGCCTAGACAGATTGCTATATGGTTCCAGAACAGAAGGCCTAGATGGAAGACCAAGCAGTTGGAGAAGGACTATGATCTTAAAAGACAACATGAAGCTACCAAGGCAGATAATGATGCACTTCAACCTCAGAACCAGAAGCTTCAGACAGAGGTGTTATTTTCTTCCAACTCATGA 204 0.4461 MQLARALGLQPRQIAIWFQNRRPRWKTKQLEKDYDLKRQHEATKADNDALQPQNQKLQTEVLFSSNS. 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03783 67 Pfam Homeodomain 2 26 IPR001356 GO:0003677
Seca9g03783 67 Gene3D - 1 35 - -
Seca9g03783 67 CDD homeodomain 2 29 IPR001356 GO:0003677
Seca9g03783 67 ProSitePatterns 'Homeobox' domain signature. 3 26 IPR017970 GO:0000981|GO:0006355
Seca9g03783 67 ProSiteProfiles 'Homeobox' domain profile. 1 28 IPR001356 GO:0003677
Seca9g03783 67 Pfam Homeobox associated leucine zipper 28 61 IPR003106 GO:0006355|GO:0043565
Seca9g03783 67 MobiDBLite consensus disorder prediction 46 67 - -
Seca9g03783 67 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 61 IPR045224 GO:0003700
Seca9g03783 67 MobiDBLite consensus disorder prediction 42 67 - -
Seca9g03783 67 SUPERFAMILY Homeodomain-like 2 37 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03783 Seca-Chr9 72311695 72311898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03783 1 62 Homeobox Transcription Factor Family AT1G69780 79.365 1.78e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca9g03783 HALZ 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03783 K09338 - gmx:100801479 113.62