Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03705 ATATTTGTTGGAGGACTCGACCCTAATGTCACAGATGAAGATCTTAGGCAACCATTCTCCCAGTATGGTGAGATAGTCTTTGTTAAGATACCCGTAGGTAAGGGGTATGGTTTTGTCCAATTTGCAAAGAGAAATAATGCTGAAGAGGTGTCAGAGAAGCTAAATGGGATATTGATTGGCAAGCAAACAATTCGTCTTTCTTGGGGCCACAAATAA 216 0.4074 IFVGGLDPNVTDEDLRQPFSQYGEIVFVKIPVGKGYGFVQFAKRNNAEEVSEKLNGILIGKQTIRLSWGHK. 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03705 71 PANTHER GEO13361P1-RELATED 1 68 - -
Seca9g03705 71 SUPERFAMILY RNA-binding domain, RBD 1 69 IPR035979 GO:0003676
Seca9g03705 71 Gene3D - 1 71 IPR012677 -
Seca9g03705 71 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 71 IPR000504 GO:0003723
Seca9g03705 71 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 65 IPR000504 GO:0003723
Seca9g03705 71 SMART rrm1_1 1 67 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03705 Seca-Chr9 61453342 61453641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03705 1 71 Eukaryotic Initiation Factors Gene Family AT4G34110 33.766 1.39e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03705 - - fve:101313571 124.405