Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03702 ATGAAGCACATGACTAGACAAGAATTTGTGGCCGCCATAAGAAGGAAGAGCAGTGGTTTCTCAAGGGGTGCATCAATGTATCGTGGAGTCACAAGGCATCAGCAACATGGAAGATGGCAAGCAAGGATTGGCAAGGTTGCAGGAAACAAAGATCTATATTTAGGAACTTTCAGTACTGAAGAAGAGGCTGCAGAAGCATACGACATTGCTGCAATAAAGTTCAGAGGTCTTAATGCGGTAGTGAGCCGCTTCAGTGCCTTCGAGAGCCTCCATGAGACGACTGAGGTTCAGGGACGGTGA 300 0.4733 MKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHQQHGRWQARIGKVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVVSRFSAFESLHETTEVQGR. 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03702 99 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 81 - -
Seca9g03702 99 CDD AP2 25 80 IPR001471 GO:0003700|GO:0006355
Seca9g03702 99 ProSiteProfiles AP2/ERF domain profile. 26 85 IPR001471 GO:0003700|GO:0006355
Seca9g03702 99 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Seca9g03702 99 SUPERFAMILY DNA-binding domain 25 80 IPR016177 GO:0003677
Seca9g03702 99 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Seca9g03702 99 FunFam AP2-like ethylene-responsive transcription factor 25 86 - -
Seca9g03702 99 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03702 Seca-Chr9 61217796 61218417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03702 1 82 AP2-EREBP Transcription Factor Family AT3G20840 95.122 4.78e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g03702 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03702 K09285 - thj:104816905 154.451