Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03688 ATGGCGAGTCGGCTAAGGGAAGACGAGAAAAACGAGCGCGTGATTCGAGGTCTCCTCAAGCTTCAACCGAATCGCAGATGCATTAACTGCAACAGTTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGTGGAATACACCGGGAATTTACACATCGAGTGAAATCAATTTCAATGGCAAAATTTACTTCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAGAGAAATTTATTTTAAAGAATGGGATGCAGAACGTCATTCTTTCCCTGATAGCAGTAATGTAGACAGGCTCCGAGACTTTATTAAGCATATTTACGTGGATAGAAGATTCACTGGAGATAGGACTTATGACAAACCACCAAGAGTAAAGGGGAAAGATGATTCCTATGAAAACAGGAGAGTTGAGGCGTATCAAGGAGGATCGAAAAGCCCTCCATATGAGGACACATATGAACGTCGTTATGGTGACAAGTCTAGTCCAGGTGGCAGAAGTCCTGGATATGACCAAGAAAGTAGGCAATATGGTGATTATAAGAGAAGTCCTGGTCGCCCTCCAATTATCAATGATTGGCGTCGTGAAGATCGTAGAATATCAGATAGAGATCATAAGGTGGAAAGCCAATCTCCTGAGCGAGCTAAAGACCTGGATTCTTCAAGCCCGCCTGTGGTCCAACCTGTTAGAGATATTTTGGGAGAAAATGTAGTACTGCTTCGGATAAGTGAACCTCCCAAACCAAACAGTGGAAGGGTTGCTGATGGCACAACATTGACACAGAGAACTGCTTCCTCTGGTAGCTTGGCTTCCAGCAACGAAAACCCAGTGGATGTTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGTACCTATTGCTCTAGCAATTCCTCAAGCCCAACAAACTTCTGTGCCTCAACCTGTTGTGCAGCCAGCAAATTCCAGTGATGACAATTGGGCCTCTTTTGATGTTGCTCCTGAGGCAAAAGCAACTCCAAGCCCTTCAAATTTAAATCCACTTGAATCTGTACTATCCCAATTGTCTGTGCCAGCATCTTTACCTGCTCATGTATCTGGAGTCCAAGGTGATCCACATGTTGTAACAGCATCAGCTCCCACTTCTGCTTCTGGAGCTGCAAGTATTAGCGATTTCTCAGCTTTCCCACCCAGTGGTGCTTCAGTACCATCTACTGGATTGGCAACAGTATCGCCTCTTAATAATGTAGGACAGTGGGCCAGTTTGCAGCATCAGCAACCATTGTTCCCTACTGCAGTTAGTCAGTCTACTACTCAACAATTTGCACCACCAGTGGGTAGTGCTGTGAATAATCAGCCATGGGGTGTACCTTCTGTACCCACAGCACAAGGGCGTCCAATTACACCAATGCCACATGCACATCACCATGCTTCAAATCCTGCCAATGAGGCTATAAGCAGTGTTGTTTCTCAACCTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAAAAGAACTTCCTGAGGATCTGTTCACTGTAAAATACTCATCCTTCCCTGCTCCAGTTCTAGGTTGGCAAATGGGTGTTCCTCATGGCATGGGTATCTCAATGCAATATAATAATGTGGTGGTACTGTTACATTCCAGACCCATGCCGAGTTTTCCGCAGCCATCAAAGTCAACGAATCCATTTGATGTTAGCAGCAAACCAACCCCAACTGTACATGCCTGGACTCCAGCGCCGTCAACCTTGCAAGGTGCCCTGCCTAGTATACCACCTTCAAGCGTAATGCACCCTTCAAGTCTGGGCAATCCATCACATGCCTGGACTCCACCCCTGTCATCATCGTATGTATCAGTCCTGCCTGCACAAGCACAGCCTCATGCATCAACATCGGGACCAAGGGCATACATGGGGCAACAAATGCCAAGTAACATACCGATGCCAAGGCAAGAAGTTGGGAATCTTGGTACTGAGGGAGCCCTTTTTGGGTTGGCAAATTCAGATCAACAGCTGGCCAGTAGGTTTTCAACCACTGCCACCCCTAACTCCTTCCCTTCGGGAGGGAACCCATTCGGATAA 2097 0.4607 MASRLREDEKNERVIRGLLKLQPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEVSALQEGGNQRAREIYFKEWDAERHSFPDSSNVDRLRDFIKHIYVDRRFTGDRTYDKPPRVKGKDDSYENRRVEAYQGGSKSPPYEDTYERRYGDKSSPGGRSPGYDQESRQYGDYKRSPGRPPIINDWRREDRRISDRDHKVESQSPERAKDLDSSSPPVVQPVRDILGENVVLLRISEPPKPNSGRVADGTTLTQRTASSGSLASSNENPVDVKLETTKSLIDFDADPVPIALAIPQAQQTSVPQPVVQPANSSDDNWASFDVAPEAKATPSPSNLNPLESVLSQLSVPASLPAHVSGVQGDPHVVTASAPTSASGAASISDFSAFPPSGASVPSTGLATVSPLNNVGQWASLQHQQPLFPTAVSQSTTQQFAPPVGSAVNNQPWGVPSVPTAQGRPITPMPHAHHHASNPANEAISSVVSQPSAVEVKPSGRKELPEDLFTVKYSSFPAPVLGWQMGVPHGMGISMQYNNVVVLLHSRPMPSFPQPSKSTNPFDVSSKPTPTVHAWTPAPSTLQGALPSIPPSSVMHPSSLGNPSHAWTPPLSSSYVSVLPAQAQPHASTSGPRAYMGQQMPSNIPMPRQEVGNLGTEGALFGLANSDQQLASRFSTTATPNSFPSGGNPFG. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03688 698 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Seca9g03688 698 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Seca9g03688 698 MobiDBLite consensus disorder prediction 125 239 - -
Seca9g03688 698 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Seca9g03688 698 MobiDBLite consensus disorder prediction 559 578 - -
Seca9g03688 698 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Seca9g03688 698 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Seca9g03688 698 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Seca9g03688 698 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Seca9g03688 698 MobiDBLite consensus disorder prediction 679 698 - -
Seca9g03688 698 MobiDBLite consensus disorder prediction 486 500 - -
Seca9g03688 698 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Seca9g03688 698 MobiDBLite consensus disorder prediction 197 224 - -
Seca9g03688 698 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Seca9g03688 698 MobiDBLite consensus disorder prediction 439 464 - -
Seca9g03688 698 MobiDBLite consensus disorder prediction 439 506 - -
Seca9g03688 698 MobiDBLite consensus disorder prediction 313 334 - -
Seca9g03688 698 CDD ArfGap_AGFG 12 122 - -
Seca9g03688 698 PANTHER ARFGAP/RECO-RELATED 1 698 IPR044820 GO:0005096
Seca9g03688 698 MobiDBLite consensus disorder prediction 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03688 Seca-Chr9 60461815 60477154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03688 12 122 C2H2 Transcription Factor Family AT4G21160 33.333 5.23e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03688 - - gmx:102669541 1061.21