Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03685 ATGAGGAAGAAAGCGTGTTCGAATCTCTTGTTCCTGATTGCGTTGTTCATAGCCACACTCTCTCTCAGTGTCTCATCATTCAAAGTCTCCGATGGAGGCCTCACAGATGCAGAAGCCATGTACATCAAACAACGCCAGCTTTTATACTACAGAGACGAGTTCGGTGACAGAGGAGAAGAAGTAACGGTGGACCCTTCTTTGGTGTTCGAAAACAACCGCATCAGAAACGCTTACATAGCTTTACAAGCTTGGAAGCAAGCCATTCTCTCTGATCCTCGGAACCTTACCAAAAACTGGGTTGGCTCCAATGTCTGCAACTACACCGGTGTTTTCTGCGCTCCGGCGCTGGATAATCCCAAGATCCGCACCGTCGCCGGCATAGACCTCAACCACGGCGACATTGCAGGGTACCTCCCGGAGGAGCTAGGTTTACTCGTCGACCTTGCACTCTTCCATGTCAACAGCAACAGGTTCTGTGGAACGGTGCCTCACAAGTTTGAGAGGCTGAAAATCTTGTTTGAGTTGGATCTCAGTAATAACCGCTTCGCCGGGAAGTTCCCGGAGGTGGTGCTGCGGTTGCCGGAGCTGAAGTTTCTAGATCTGAGGTTTAACGAGTTTGAAGGAACTGTTCCGAAAGAGCTCTTTGATAAGGACCTAGACGCGATCTTCATCAATGACAACCGGTTCGTGTTTGACCTACCGGATAATTTCGGTAACTCGCCGGTGTCGGTGATTGTGCTGGCGAATAACCGTTTCCACGGTTGTGTACCTGCTGGAATTGGGAACATGAAGAACCTGAATGAGATAATTTTCATGAACAATGCGTTCAGGTCTTGTTTACCAGAGGAAATAGGGTTGTTGAAGAACTTGACGGTGTTCGATGTGAGTATCAACCAGCTTTTGGGACCGTTGCCGGAGACTATAGGGAATGCGGTGAGTTTGGAACAGCTGAATGTGGCTCATAATTTGCTTTCTGGGAAGATTCCAGAGAGTATTTGTGCTTTGCCGAATTTGCAGAACTTTACTTATTCTTATAACTTCTTCACCGGTGAGCCGCCGAGGTGTTTGGCGTTGCCGGCGTTTGATGACCGGAGAAACTGTTTGCCGGCGAGGCCGTTACAGCGCTCAGCAGCGCAATGTAAGTCGTTTTTGTCTCACCCTGTTGATTGCAACTCTTTTAGGTGTAAGGCTTTTGTTCCTTCTTTGCCTTCTCCACCACCCTCCCCTGTTTTCCCATCGCCATCACCGTCGCCGCCATCACCTGTGTTTTCTCCACCTCCTTCACCAGTGTACTCGCCACCGCCTGTTTATTCACCACCGCCGGTTTATTCGCCGCCACCTCCTCCTCCACCACCACCACCAGTCTACTCCCCACCGCCACCACCTCCTTCACCACCGCCGCCTTCGCCACCACCACCTTCACCACCTCCACCGGTCTATTCCCCACCACCGCCTCCACCTTCACCGCCACCACCTTCTCCACCACCACCGCCTCCACCGGTCTATTCTCCACCTCCCCCGCCACCATCACCACCTCCGCCATCTCCTCCACCACCCTCACCGCCAACGCCTGTGGCATCACCACCACCACCACCCTCCCCAACTCCAACGCCACCATATTGTGTCAGGCCTCCACCGCCGCCTCCGCCCCCACATTCACCACCACCACCACCACCGGCTCCTGTATTCTCCCCACCACCACCTGTGCCTTACTACTACAGCTCACCTCCACCGCCATCGCCATCACCGCCACCACCTCATCATTCTCCTCCACCACCACCTCACTCTCCTCCACCACCTGTTTATCCATATTTATCACCACCGCCACCTCCTCCTGTCCACTCTCCTCCTCCTCCACCAGTCTATTCCCCACCGCCACCATCTCCACCACCTTGTATAGAACCTCCTCCTCCTCCACCTCCCTGTGAAGAACATTCACCTCCACCTCCTTCACCACAGCCAGCACCTTACCTGCCACCACCTTCCCCATCTCCACCACCACCACCGGTAATTTATGCTTCTCCACCACCTCCACCAGTTCAATATAGTTCACCACCACCACCACCTACTCCTGTATATGAAGGGCCTTTGCCACCTGTGATCGGAGTCTCATATGCATCTCCTCCTCCACCACCCTTCTATTGA 2145 0.5343 MRKKACSNLLFLIALFIATLSLSVSSFKVSDGGLTDAEAMYIKQRQLLYYRDEFGDRGEEVTVDPSLVFENNRIRNAYIALQAWKQAILSDPRNLTKNWVGSNVCNYTGVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHVNSNRFCGTVPHKFERLKILFELDLSNNRFAGKFPEVVLRLPELKFLDLRFNEFEGTVPKELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCVPAGIGNMKNLNEIIFMNNAFRSCLPEEIGLLKNLTVFDVSINQLLGPLPETIGNAVSLEQLNVAHNLLSGKIPESICALPNLQNFTYSYNFFTGEPPRCLALPAFDDRRNCLPARPLQRSAAQCKSFLSHPVDCNSFRCKAFVPSLPSPPPSPVFPSPSPSPPSPVFSPPPSPVYSPPPVYSPPPVYSPPPPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPTPVASPPPPPSPTPTPPYCVRPPPPPPPPHSPPPPPPAPVFSPPPPVPYYYSSPPPPSPSPPPPHHSPPPPPHSPPPPVYPYLSPPPPPPVHSPPPPPVYSPPPPSPPPCIEPPPPPPPCEEHSPPPPSPQPAPYLPPPSPSPPPPPVIYASPPPPPVQYSSPPPPPTPVYEGPLPPVIGVSYASPPPPPFY. 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03685 714 Gene3D Ribonuclease Inhibitor 78 237 IPR032675 -
Seca9g03685 714 Gene3D Ribonuclease Inhibitor 238 362 IPR032675 -
Seca9g03685 714 FunFam Leucine-rich repeat extensin-like protein 1 78 239 - -
Seca9g03685 714 MobiDBLite consensus disorder prediction 442 560 - -
Seca9g03685 714 Pfam Leucine rich repeat N-terminal domain 80 112 IPR013210 -
Seca9g03685 714 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 516 - -
Seca9g03685 714 SUPERFAMILY L domain-like 78 359 - -
Seca9g03685 714 MobiDBLite consensus disorder prediction 406 425 - -
Seca9g03685 714 FunFam Leucine-rich repeat extensin-like protein 5 240 379 - -
Seca9g03685 714 PRINTS Proline rich extensin signature 397 409 - -
Seca9g03685 714 PRINTS Proline rich extensin signature 413 429 - -
Seca9g03685 714 PRINTS Proline rich extensin signature 450 471 - -
Seca9g03685 714 PRINTS Proline rich extensin signature 438 450 - -
Seca9g03685 714 MobiDBLite consensus disorder prediction 575 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03685 Seca-Chr9 60388260 60390446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03685 21 395 Leucine-rich Repeat extension Gene Families AT3G24480 77.660 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03685 - - gmx:106799218 687.567