Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03669 ATGCCGACCCGGTCAACTGGAGCCATGACCCAGGACTGGGAACCGGTGGTGCTGCACAAGTCGAAGCCCAAGGCGCAGGACCTGCGGAACCCCAAGGCCGTGAACCAGGCGCTTCGAACCGGTGCGGAGGTCACGACGGTGAAGAAGTTCGATGCCGGTTCGAACAAGAAAACCAGCGGTCCGGTCGTGAACCCGAGGAAGCTGGACGAAGGGACCGAACCGGCAGCGCTGGAGCGAGTGGCGGGAGAGGTGCGTCACACGATACAGAAGGCGCGTTTGGAGAAGAAGATGAGCCAGGCTGAGCTGGCCAAACAGATCAATGAAAGAGTGCAGGTGGTACAGGAATACGAGAATGGTAAAGCCGTGCCGAACCAGGCCGTGCTTGCCAAGATGGAGAGGGTCCTTGGAGTGAAGCTTAGGGGTAAAATTGGAAAGTGA 438 0.589 MPTRSTGAMTQDWEPVVLHKSKPKAQDLRNPKAVNQALRTGAEVTTVKKFDAGSNKKTSGPVVNPRKLDEGTEPAALERVAGEVRHTIQKARLEKKMSQAELAKQINERVQVVQEYENGKAVPNQAVLAKMERVLGVKLRGKIGK. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03669 145 CDD HTH_XRE 88 139 IPR001387 -
Seca9g03669 145 Gene3D - 71 145 IPR010982 GO:0003677
Seca9g03669 145 SUPERFAMILY lambda repressor-like DNA-binding domains 85 139 IPR010982 GO:0003677
Seca9g03669 145 FunFam Multiprotein bridging factor 1 72 145 - -
Seca9g03669 145 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Seca9g03669 145 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Seca9g03669 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 142 - -
Seca9g03669 145 Pfam Helix-turn-helix 88 139 IPR001387 -
Seca9g03669 145 Coils Coil 88 108 - -
Seca9g03669 145 MobiDBLite consensus disorder prediction 49 72 - -
Seca9g03669 145 MobiDBLite consensus disorder prediction 1 28 - -
Seca9g03669 145 SMART mbf_short4 87 142 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03669 Seca-Chr9 58842978 58843415 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Seca9g03669 MBF1 4.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03669 K03627 - cpap:110818571 241.506