Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03613 ATGGCGTTGGTTTCAGCTGGTTTCCATCCCATAAGTAATGTGTGTGGCAGAAGAGAGAGTTGGAGACTGAAGGTGAAGGTTATCCGAGTGTGGAATATGTGTGCCATTGCCACGCCTGATGATCCTTATGCCCTGCAGATGCTTCTTCTTGATGAAGAGGGCACCTTGATCGAAGGTACTGTGCAGAAGGCAAATATGCAAAGGTTTTCACCAATCATTGTGGAGGGACGAGTTTACAAGGTCACCAACTTCAACGTCATAAAGAATGGTGGGAACTTTAGGGCTTCTAGGCATGATCATAAGATCCTTTTTATTGTGAACACAAAAGTGATTTCCTGTGAAAATGTTTGCATCCCATCTTTGGGGTTCAGCCTTAAGAAGACTGATGATATTCTCCGAACAAATGGTTTCTCTGAGTACCTGCTAGATTTCATGGGCATTCTAACTGTTGTTTCTGAGGAGATCATTGTGGTGAAGGGTGAGATGCAGAAGCGTCTAGTGTTACTTGATTTCGTGGGTGAGATGGGAGAGGTCAGATTTACAGTTTTTGGGGATATGGTGGATGTCGTTCTTGATTTTCTTTCTCAGCCAAGGTGTGGTCTCCCAGTGGTGATCATCCAACTAGCTAGAGTTAATTTCTACAAGGGTCAAGTTGGGATCCAAAATGTTATGAATGCTACCAAGATATGGTGGAATCCTGATGTCCCCCTCGCAGTGGATTTTAAAAATAGCTTGGCAGTTCATGAGATTGAGACTGATGTAGAAGTGAGGGTCATAACACCTAGAACACGTCCTGTTTGTGCAAGGGATGAATTTCTAAAACTGTACCCAAAGAAAAGAGTTGGGGAGCTTTATGAATTAATGGAGGAAGGTTCTTTCATAATTATTGGCAATATCATGGAGGTTGTCCATGATGGTGAATGGTGGTATATGGCTTGCAGTTGTATGAGAGCTGTTAACTATGGCCGTGGAATGCCTTTTTGTGATGAATGCAAGAATATTGTCTATGATCTCACACCAAGATATAAGATTAAGGTCATGGTATCCGATGGAAGCGACAGTGCACATTTGATTATGTGGGACAGTGAATGTTACTCATTGATAAATAGATCATGTCGTGATCTGTTGTCAATTTCAAAGGTTTTATTCCCAATTTCAATTTTTTATATGAAGATTACACAAGGAGCTTCTTTTTGTTCTCAGGATAACACTAATTAA 1218 0.4113 MALVSAGFHPISNVCGRRESWRLKVKVIRVWNMCAIATPDDPYALQMLLLDEEGTLIEGTVQKANMQRFSPIIVEGRVYKVTNFNVIKNGGNFRASRHDHKILFIVNTKVISCENVCIPSLGFSLKKTDDILRTNGFSEYLLDFMGILTVVSEEIIVVKGEMQKRLVLLDFVGEMGEVRFTVFGDMVDVVLDFLSQPRCGLPVVIIQLARVNFYKGQVGIQNVMNATKIWWNPDVPLAVDFKNSLAVHEIETDVEVRVITPRTRPVCARDEFLKLYPKKRVGELYELMEEGSFIIIGNIMEVVHDGEWWYMACSCMRAVNYGRGMPFCDECKNIVYDLTPRYKIKVMVSDGSDSAHLIMWDSECYSLINRSCRDLLSISKVLFPISIFYMKITQGASFCSQDNTN. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03613 405 Pfam Domain of unknown function DUF223 47 116 IPR003871 -
Seca9g03613 405 SUPERFAMILY Nucleic acid-binding proteins 290 388 IPR012340 -
Seca9g03613 405 Gene3D - 117 254 IPR012340 -
Seca9g03613 405 Gene3D - 7 113 IPR012340 -
Seca9g03613 405 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Seca9g03613 405 CDD RPA1_DBD_A_like 22 110 - -
Seca9g03613 405 Gene3D - 278 394 IPR012340 -
Seca9g03613 405 SUPERFAMILY Nucleic acid-binding proteins 123 248 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03613 Seca-Chr9 56322272 56324426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03613 9 394 Core DNA Replication Machinery Family AT5G45400 22.967 5.85e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03613 - - lja:Lj6g3v0884310.1 283.108