Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03603 ATGTCTGTGCCATTGGAGAAAGTGCAAGGCTATGTGAGCTTAACTGAGGTTCCTACAATGGAAGGCACTGACAAGTTTTCTGAAAGGACTAGCAGTGGCTTAAACCTCAAGGCTACTGAGTTGAGGCTTGGCTTGCCTGGCTCTGAGTCACCAGAGAGGGATGTGGGTGGTGTGGAGGACAAGAATGTATACCCATTAGGTATGCTCAAGAGTTTGGTGTCTGGGGCTAAAAGGGGTTTCTCAGACACCATTGATGGTGGTTCTGGGAAGTGGTTTCTCTCTGGGAATGGTGGATCTGAGGTGGGTCTCAGTAAAGATGGTGGCTTGTTCTCTCCCAGGGGTGTTGCTGCTGGCAAGGCTCTTACTGGAGCTGAGTGTACCAACCAACAAGCATCTGTTGTGAAAGATAAAATTCCTCAGTCTCCAAAGCCAGTGAATGAGAAGAAGAGCCAGATATCTGCTCCTCCTGCTGCAAAGGAACAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTTCTCAGCCTCAAAAGAATGAAGATGATGCAGAAGCCAAGTCTGGATGCCTTTATGTAAAAGTCAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAAATTTTAGCACTTACAGGGAACTATCTTCAGCACTGGAGAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTCATGGAGTTTCTAGCCGAGATAAATTGAGTGAAAGTAGATTGATGGACCTCCTTCATGGTTCAGAATATGTCCTTACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGACTCTTGCAAGAGGCTGAGGATAATGAAAAGTTCTGAAGCAATTGGATTAGCACCAAGAGCCATGGAGAAGTGCAAAAGTCGCAACTAG 942 0.4586 MSVPLEKVQGYVSLTEVPTMEGTDKFSERTSSGLNLKATELRLGLPGSESPERDVGGVEDKNVYPLGMLKSLVSGAKRGFSDTIDGGSGKWFLSGNGGSEVGLSKDGGLFSPRGVAAGKALTGAECTNQQASVVKDKIPQSPKPVNEKKSQISAPPAAKEQVVGWPPIRSFRKNSMASQPQKNEDDAEAKSGCLYVKVSMDGAPYLRKVDLKNFSTYRELSSALEKMFSCFTISQCGSHGVSSRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03603 313 ProSiteProfiles PB1 domain profile. 193 295 IPR000270 GO:0005515
Seca9g03603 313 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 34 300 IPR003311 GO:0005634|GO:0006355
Seca9g03603 313 Pfam AUX/IAA family 39 304 IPR033389 -
Seca9g03603 313 Gene3D - 187 306 - -
Seca9g03603 313 FunFam Auxin-responsive protein 188 305 - -
Seca9g03603 313 MobiDBLite consensus disorder prediction 132 165 - -
Seca9g03603 313 SUPERFAMILY CAD & PB1 domains 191 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03603 Seca-Chr9 56093074 56097192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03603 196 298 B3 DNA Binding Superfamily AT2G46530 33.981 9.02e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca9g03603 AUX_IAA 1.7e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03603 K14484 - gmx:100803754 523.472