Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03578 ATGGATCCTCCACCGAAGAGTTGGAGCATCCATACCCGATCCGAGATCACTGCAAAGTACGAGGTTCTGGAGCGGGTCGGGTCTGGAGCCTACGCCGATGTGTACCGTGGACGGCGACTCTCCGACGGCGTGACGGTGGCGCTGAAGGAGGTTCACGACTACCAATCGGCGTTCCGGGAAATTGAGGCGTTGCGGGTCCTTCGGGGCTCCGAAAACGTCGTCTTCATGCACGAGTTCTTCTGGCGCGAGGACGAAGACGCCGTGATCGTTCTCGAGTTTCTGAGGACCGACCTCTCCACCGTGATCAGAGAAGCCTCCTCCGCCGCCGAGGTTAAGAGGTGGATGATGCAGGTTCTGAATGGGGTCCACGAGTGCCACCGGAACATGATCGTGCATAGGGACTTGAAGCCCGGAAATTTGTTGATTTCTGATGATGGGGTGCTCAAGTTGGCAGATTTTGGACAGGTTTTAGACATAAAGTTTCGATCTTGA 492 0.5589 MDPPPKSWSIHTRSEITAKYEVLERVGSGAYADVYRGRRLSDGVTVALKEVHDYQSAFREIEALRVLRGSENVVFMHEFFWREDEDAVIVLEFLRTDLSTVIREASSAAEVKRWMMQVLNGVHECHRNMIVHRDLKPGNLLISDDGVLKLADFGQVLDIKFRS. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03578 163 SMART serkin_6 20 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03578 163 ProSiteProfiles Protein kinase domain profile. 20 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03578 163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Seca9g03578 163 Gene3D Transferase(Phosphotransferase) domain 1 107 162 - -
Seca9g03578 163 Gene3D Phosphorylase Kinase; domain 1 11 106 - -
Seca9g03578 163 Pfam Protein kinase domain 20 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03578 163 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Seca9g03578 163 SUPERFAMILY Protein kinase-like (PK-like) 6 155 IPR011009 -
Seca9g03578 163 PANTHER CELL DIVISION PROTEIN KINASE 19 155 - -
Seca9g03578 163 FunFam Cyclin-dependent kinase F-1 11 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03578 Seca-Chr9 54856638 54857168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03578 4 156 Core Cell Cycle Gene Families AT4G28980 70.122 3.32e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Seca9g03578 Pkinase 4.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03578 - - cpap:110818633 256.914