Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03566 ATGCTTCCTCAGAATAGGGACGTGAAGAAAGAATCTAATATTTGTGAGGATATTTCAAGTAGATATCCAATCAAGAGCATGAATTTTTCAGAGCAAGCAAAGGGAAGGCCATTTGCTGGGACCCTTATTGTTTGTACCAGTAGTGTCCTGTGCCAATGGGCCGAGGATTTGCATAATAAAGTAACTAGCCAAGCAAATCTCTATGTGCTAGTGTACCATGAAAGTAATCGAACGAAAGATCCTTATGAGGTGGCTAAGTATGATTTTGTCCTAAAGACTTATTCCATTTTCATCATGGAGGTCCCTATGCAACCTCTAGTTGACAAAGATGATGAAGAAAAGGGAATTTGTGATGATCATTATGTACCAAGCAGGAAAAGGAAAAACCCTTTTAATTGTAATATAAATGCCAAGAAGGGATTGGAAAACACAATTCAGACTGTTGCTCGACCTTTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCCCAGAGTATAGAGAATCACAAAACTCAAGTTGCAAGGGCATGTTACAGTCTTCGTGCTAAGCGTAGATGGTGTTTGTCAGGGACTCTTATCCATAATTCAATTGATGATCTCTACAGTTACTTTAGATTTTTATGA 630 0.3905 MLPQNRDVKKESNICEDISSRYPIKSMNFSEQAKGRPFAGTLIVCTSSVLCQWAEDLHNKVTSQANLYVLVYHESNRTKDPYEVAKYDFVLKTYSIFIMEVPMQPLVDKDDEEKGICDDHYVPSRKRKNPFNCNINAKKGLENTIQTVARPFAKVAWFRVVLDEAQSIENHKTQVARACYSLRAKRRWCLSGTLIHNSIDDLYSYFRFL. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03566 209 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 30 209 - -
Seca9g03566 209 Gene3D - 23 121 IPR038718 -
Seca9g03566 209 Gene3D - 122 209 IPR038718 -
Seca9g03566 209 CDD DEXDc_SHPRH-like 40 209 - -
Seca9g03566 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 209 IPR027417 -
Seca9g03566 209 Pfam SNF2-related domain 38 209 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03566 Seca-Chr9 54420841 54421530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03566 35 209 RAD5 or RAD16-like Gene Family AT1G61140 62.431 9.17e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca9g03566 SNF2_N 6.4e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03566 - - gmx:100792901 291.197