Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03558 ATGGGGGAAGGTGAAGGTGGTGACTGCGCTCCCAAGAATGTGCCGTCATCCTCATCGGAAGTTGTTGCATCGGCGGCGGCAGCCTCGGCGTCGTTGGATGCTCCGGCGAAGAAGCTAGCGAGGCAGCTCGATTTCACTGGCGCGATGGAACAATTGCTATCGCAGCCGCAGCAGCAGAGTGTGACGCAGCAACCGATGACTGTGTTGCCGTTGCCGCCGCAACAGGCACCTCATCCTTCGGTGAGGGTTGGGAAACCAGAATCTCCAAAGTCAAGATCAAGACCTAACTTTGAAATGAAAGAAGTTACTCCAAAGAAGCAAAAGCAGTGCAATTGCAAACACTCTAAATGCTTAAAACTATATTGTGAATGTTTTGCATCGGGAATATATTGTGAGGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGAAAATGAAGCTGCTAGACGGGAAGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCAAGCAGCCCTCATGGCACACGTGATAGCCGGGAGGAGGCTGGGGAAGGTTTAATATTAGGAAAACATAACAAGGGGTGCCATTGTAAAAAATCTGGATGCCTGAAGAAGTATTGTGAATGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTGTTTCATGGAGATCAAAATAACAACCTGACTTATATTCAGCAAGCAGCAAATGCTGCCATAACTGGAGCTATTGGTGCCTCTGGCTACTCATCACCTCCAGTATCCAAGAAAAGAAAAGGTCAGGAACTCTTCTTTTGGCCTGCAGCCAAGGATCCAACAAATAGCAAGATGGGACAACAGGTAAACCATGTCAGAGGTCCAGCACCTTCCTCATCCTTGTCACCTGTGCCAGGTGCTCGTGTTGGAACTGCTACATTAGGTCCTTCAAAATTTATGTACAGGTCTCTTTTAGCAGACATTATACAACCACAACACCTCAAGGAGCTTTGCTCAGTTCTGGTACTAGTATCTGGACAAGCTGCAAAGACACTTGCAGACCAGAAAAGTTTCATGGAAAAGCATACAGAAGATCAGATGGAAACTTCCCTTGCTTCTTCAACTCAAGAGCAGTTACCAAGTCAAAAGGAGGGTGTTGTTGAGAAGGCTATGGCTGATGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCAGATAATTCCAGTTCCGATGGTGCTGATGCCCCGAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCCTTGATGTGTGATGAGCAAGATACAATGTTTATGACAGCTGCCTCCCCCACTGGGCCAATGGTCCATGCTAGCAACACATCTTCGCAATTTCCTTATGGACAAGGAATGACAGAGGTCTACGCTGAGCAAGAAAGGATTGTACTAACAAAGTTTAGAGATTTTCTCAATAGAGTTATCACCATGGGAGAAATAAATGAAACAAAGTGTTCTTCATTGGCTAGAAGTGAATTAGAGAGTCAAAAGGACCCAATCAGCTATGGCATTGGAAATGCCAGTACTGAGTTGGTGCATCAGCAGGGGACTGCCAGCAATGGTGTCACCAAAACTGTTGTTCCACGGATGGCCACAACTCCAACATCTATGATCCCTGGTAATAATGTTGCTGAAAATGGGGAGACTAAACCGAAGGTCGAAAAAGAGATGTGA 1737 0.456 MGEGEGGDCAPKNVPSSSSEVVASAAAASASLDAPAKKLARQLDFTGAMEQLLSQPQQQSVTQQPMTVLPLPPQQAPHPSVRVGKPESPKSRSRPNFEMKEVTPKKQKQCNCKHSKCLKLYCECFASGIYCEGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREEAGEGLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNLTYIQQAANAAITGAIGASGYSSPPVSKKRKGQELFFWPAAKDPTNSKMGQQVNHVRGPAPSSSLSPVPGARVGTATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLADQKSFMEKHTEDQMETSLASSTQEQLPSQKEGVVEKAMADDCSSANQTDKISPDNSSSDGADAPKGRPMSPGTLALMCDEQDTMFMTAASPTGPMVHASNTSSQFPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELESQKDPISYGIGNASTELVHQQGTASNGVTKTVVPRMATTPTSMIPGNNVAENGETKPKVEKEM. 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03558 578 SMART CXC_2 105 145 IPR033467 -
Seca9g03558 578 SMART CXC_2 190 231 IPR033467 -
Seca9g03558 578 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 107 142 IPR005172 -
Seca9g03558 578 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 193 227 IPR005172 -
Seca9g03558 578 MobiDBLite consensus disorder prediction 368 436 - -
Seca9g03558 578 MobiDBLite consensus disorder prediction 553 578 - -
Seca9g03558 578 MobiDBLite consensus disorder prediction 403 421 - -
Seca9g03558 578 PANTHER TESMIN/TSO1-RELATED 53 501 IPR028307 -
Seca9g03558 578 MobiDBLite consensus disorder prediction 50 69 - -
Seca9g03558 578 ProSiteProfiles CRC domain profile. 106 230 IPR005172 -
Seca9g03558 578 MobiDBLite consensus disorder prediction 50 100 - -
Seca9g03558 578 MobiDBLite consensus disorder prediction 85 100 - -
Seca9g03558 578 MobiDBLite consensus disorder prediction 377 391 - -
Seca9g03558 578 MobiDBLite consensus disorder prediction 1 33 - -
Seca9g03558 578 MobiDBLite consensus disorder prediction 292 306 - -
Seca9g03558 578 MobiDBLite consensus disorder prediction 292 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03558 Seca-Chr9 54086048 54096998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03558 35 546 CPP Transcription Factor Family AT4G29000 56.159 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca9g03558 TCR 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03558 - - gmx:100777698 902.508