Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03555 ATGTCTCTAGGCTTCTCAAAGAGCACATTTACATATGAGGAGTTGGCACGGGCAACAGATGGTTTCTCTGATGCCAACCTCCTTGGACAAGGTGGATTTGGATATGTGCACAGAGGAATTCTCCCCAATGGTAAGGAGGTGGCTGTTAAGCAGCTAAAGGCTGGAAGTGGGCAAGGGGAGCGTGAGTTTCAAGCTGAAGTTGAGATAATTAGCCGTGTCCATCACAAACATCTTGTTTCTTTGGTTGGATACTGTATCACTGGGTCCCAGAGGCTGCTTGTTTATGAAATTGTTCCCAACAATACATTGGAATTCCACTTACATGGAAGAGGGCGTCCCACCATGGATTGGCCCACAAGACTACGAATTGCCTTAGGAGCTGCAAAAGGACTGGCCTATCTTCATGAAGATTATCATCCTAAGATTATCCATCGTGATATCAAGTCTGCCAACATCCTTCTGGATTTTAAGTTTGATGCAAAGGTATGTTCTGTTGCATGTTCCTGGAAGGTTGCAGATTTTGGTCTTGCAAAGTTTTCTTCCGATGTCAATACTCATGTTTCTACTCGAGTGATGGGCACCTTTGGGTATCTGGCTCCAGAATATGCATCTAGTGGAAAACTTACAGAAAAATCAGATGTTTTCTCCTATGGAGTCATGCTTCTTGAGTTAATCACTGGACGGCGACCAGTTGATAAAACTCAAACTTTCATGGAGGATAGTTTGGTAGACTGGGCTAGGCCTTTGCTCACTCGTGCTTTGGAAGAAGATAATTTTGATTCTCTGATAGACCCAAGGCTGGAGAATGAATATGATCCTAATGAGATGGCTAGAATGGTGGCATGTGCTGTGGCTAGCACACATCATTCAGCAAAACGTCGACCATGGATGAGCCAGGTTGTCCGTGCTCTGGAAGGAGATGTGTCTCTAGCAGATCTTAATGAAGGAATCAAACCTGGACACAACACTATGTACAATTCTCATGAAAGCTCGGATTATGATACTGCACAATACAGAGAAGACATGATAAAGTTCAGAAAAATGGCACTAGGAACTCAGGAGTATGCTGGCAGCAGTGAATACAGTGCAGCTACAAGTGAGTACGGTTTAAACCCATCTGGCTCAAGCAGTGAATCACAGAGCCGCCAAACCACCCGGGAAATGGAAATGAGAAGAATGAAGAATAGTCAAGGTTTCAGTGGAAGTTCCTGA 1212 0.4422 MSLGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEIVPNNTLEFHLHGRGRPTMDWPTRLRIALGAAKGLAYLHEDYHPKIIHRDIKSANILLDFKFDAKVCSVACSWKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDKTQTFMEDSLVDWARPLLTRALEEDNFDSLIDPRLENEYDPNEMARMVACAVASTHHSAKRRPWMSQVVRALEGDVSLADLNEGIKPGHNTMYNSHESSDYDTAQYREDMIKFRKMALGTQEYAGSSEYSAATSEYGLNPSGSSSESQSRQTTREMEMRRMKNSQGFSGSS. 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03555 403 Pfam Protein kinase domain 24 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03555 403 SUPERFAMILY Protein kinase-like (PK-like) 5 304 IPR011009 -
Seca9g03555 403 SMART serkin_6 22 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03555 403 ProSiteProfiles Protein kinase domain profile. 22 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03555 403 FunFam proline-rich receptor-like protein kinase PERK1 1 97 - -
Seca9g03555 403 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 7 373 IPR047117 -
Seca9g03555 403 Gene3D Transferase(Phosphotransferase) domain 1 98 315 - -
Seca9g03555 403 FunFam Proline-rich receptor-like protein kinase PERK1 98 315 - -
Seca9g03555 403 Gene3D Phosphorylase Kinase; domain 1 2 96 - -
Seca9g03555 403 MobiDBLite consensus disorder prediction 360 403 - -
Seca9g03555 403 MobiDBLite consensus disorder prediction 360 383 - -
Seca9g03555 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Seca9g03555 403 ProSitePatterns Protein kinases ATP-binding region signature. 28 50 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03555 Seca-Chr9 54010997 54013534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03555 3 386 Trihelix Transcription Factor Family AT1G70460 59.115 8.13e-155 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca9g03555 Pkinase 5.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03555 - - gmx:100781944 714.531