Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03549 ATGGCCTTGCTGTGTGGTTCAGCTTCGGTGGTGACCTTCCCTTCATCTTCATTCTCTCTTCACAAGAATGCAGCAACAAAATCATCCTTTTCTGCCTCCCAGTTGTTGCCACTACAAAAGCTTTCATTATCTCCATCTTCTTCTATTCGTTCCCATTTACCTGCAGCTTTCCGTGTCCATTGTCAGCAGGACTCTGTGTCCGTCGTCCCGCAAGAACAAGTACACGAACAAGATCCACGCTTTATGTGCCTCGAACCCGAGCCCCGATTCAAAGGCCCGGACGTTTGGAACAAGACCTATTATCCAAAAGCTGCAGATCATGTCAATACAGAGAAAACATGGTATATCGTTGATGCTACAGATAAAATTCTTGGAAGACTAGCATCAACAATTGCTATTCACATCAGAGGGAAAAACCTAGTGACCTATACACCCAGTGTGGACATGGGTGCATTTGTAATTGTGGTAAATGCAGAAAAGGTTGCTGTATCTGGGAAAAAGAGGACCCAAAAGCTTTATAGGAGGCATTCTGGACGACCTGGTGGTATGAAAGTGGAGACATTTGCCCAGCTGCAGAACAGAATTCCTGAAAGAATCATTGAGCATGCTGTTAGGGGCATGCTTCCAAAAGGGAGGCTTGGCAGGAGACTATTCACCCACCTAAAGGTTTATAGCGGTCCAGATCATCCACATGCGGCACAGAAACCCATTGATTTGCCAATAAGGGATAAGAGAATACAGTTGGAGAGATAG 753 0.4542 MALLCGSASVVTFPSSSFSLHKNAATKSSFSASQLLPLQKLSLSPSSSIRSHLPAAFRVHCQQDSVSVVPQEQVHEQDPRFMCLEPEPRFKGPDVWNKTYYPKAADHVNTEKTWYIVDATDKILGRLASTIAIHIRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYSGPDHPHAAQKPIDLPIRDKRIQLER. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03549 250 FunFam 50S ribosomal protein L13 97 241 - -
Seca9g03549 250 NCBIfam 50S ribosomal protein L13 108 239 IPR005823 GO:0003735|GO:0005840|GO:0006412
Seca9g03549 250 SUPERFAMILY Ribosomal protein L13 108 241 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca9g03549 250 Pfam Ribosomal protein L13 112 230 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca9g03549 250 ProSitePatterns Ribosomal protein L13 signature. 204 226 IPR023563 GO:0003735|GO:0005840|GO:0006412
Seca9g03549 250 Gene3D Ribosomal protein L13 98 246 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca9g03549 250 CDD Ribosomal_L13 114 227 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca9g03549 250 Hamap 50S ribosomal protein L13 [rplM]. 114 249 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca9g03549 250 PANTHER RIBOSOMAL PROTEIN L13 103 245 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03549 Seca-Chr9 53964353 53967032 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03549 116 249 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 29.787 1.33e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03549 K02871 - gmx:100305981 377.867