Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03533 ATGCTTATTTCATTTATTCTACTTGGAAAGTATTTGGAAGTGTTGGCAAAGGGTAAGACATCACAGGCAATTGCTAAGCTTATGGACTTGACCCCTGATACAACTACCTTATTAGCTCAAGATAATGAAGGGAATGTCATCAGTGAACAACAAATTGATAGCCGGTTGATACAAAAGAATGGTGTGATCAAAATTGTTCCGGGTGCAAAAGTAGCATCCGATGGTTTTGTTATCTGGGGACAAAGTCACATAAATGAAAGCATGATAACTGGTGATGCAAGGCCTGTGGCGAAGAAGAAGGGTGATATGGTGATTGGAGGCACTGTGAATGAGAATGGGATTTTGCATGTTAAGGTAAAAAGTGTTGGATCAGAGAGTGCCCTTTCCCAGATTGTTCGACATGTTGAGTCTGCCCAAAGGGCTAAAGCTCCTGTCCAGAAACTTGCAGACCAAATTTCTAAATACTTTGTTCCACTAGTCATTGTGCTTTCTCTTTCAACATTTCTTTCTTGGTTTGTAGCTGGAAAGTTACATGCATACCCAAATTCTTGGATGTCATCCTCCATGAACAACCTTGAGCTTGCAATTCAGTTTGGAATTTCACTGATGGTCATAGCATGCCCTTTTGCTCTTGGCCTAACCACTCCTATAGCTGTTGTGAAGAAAAGGGCCAAGATATCACCAAGTAAGAATGTGGCATGGATTTCTTCTATGTCCCATCCAGGAAGAAGGCTTCAAGAGTTTGCAGCTTCTATCAATTTTCCATTCATGTTTGATCAGATAATAATGGGAAGTGAAGATGTTCAAAGAATTGAACTTGGTCACAAACTCATAGTCAACTGCATGATACACCAGTGGATGTCTAACAGGAGTTTCTCATTGGTTGAATGTACCATACCTAAAGATAATGTTACTTTGCAATCTTATGTTGGGTTCAGGGTTCAACATGATGCTTGCTGTACTTCTTTCCACAGCAGGAGTAATCATGTCTATAAAAATTTCAACAACCTCTTCAATAATAGTCATCAAAGATTAGGAGTGGCATTATATGGTATTGTCTGGCTGCAAGTCCTAGTTGGGGATCCAAAAGAAGAAATGTGTGGTTTAGGAAATGTCTTCAAGTTATGA 1128 0.3963 MLISFILLGKYLEVLAKGKTSQAIAKLMDLTPDTTTLLAQDNEGNVISEQQIDSRLIQKNGVIKIVPGAKVASDGFVIWGQSHINESMITGDARPVAKKKGDMVIGGTVNENGILHVKVKSVGSESALSQIVRHVESAQRAKAPVQKLADQISKYFVPLVIVLSLSTFLSWFVAGKLHAYPNSWMSSSMNNLELAIQFGISLMVIACPFALGLTTPIAVVKKRAKISPSKNVAWISSMSHPGRRLQEFAASINFPFMFDQIIMGSEDVQRIELGHKLIVNCMIHQWMSNRSFSLVECTIPKDNVTLQSYVGFRVQHDACCTSFHSRSNHVYKNFNNLFNNSHQRLGVALYGIVWLQVLVGDPKEEMCGLGNVFKL. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03533 375 SUPERFAMILY Calcium ATPase, transmembrane domain M 5 221 IPR023298 -
Seca9g03533 375 SUPERFAMILY Calcium ATPase, transduction domain A 49 135 IPR008250 -
Seca9g03533 375 Gene3D - 17 139 - -
Seca9g03533 375 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 220 - -
Seca9g03533 375 Pfam E1-E2 ATPase 30 219 - -
Seca9g03533 375 FunFam Copper-transporting ATPase 1, putative 17 139 - -
Seca9g03533 375 NCBIfam HAD-IC family P-type ATPase 2 224 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03533 Seca-Chr9 53635070 53637760 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03533 1 220 Primary Pumps ATPases AT1G63440 78.636 5.02e-116 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03533 K17686 - gmx:100817431 353.984