LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g03510	ATGTCAACCGCACCGGCGCCTTCTTCGCCGCCGGGGAACAACTCCACCGCTCCTCCGCCGTCAACTCCGGCTACACCTTCCGCACCACCACCCGCCACTCCTTCCGCACCGCCTCCCGCCACTCCTTCCTCCCCGCCGCCGGCCACTCCATCGTCGCCGCCTCCGGCAACTCCCTCCTCGCCTCCGCCAGCAACTCCTTCCTCACCACCTCCGGCCACTCCCTCCGCGCCTGCACCGGCCACGCCTTCGACCTCTCCTCCGGCTCCTACCACGCCATCGACTTCTCCGCCAGCCCCTGCGACGCCGTCGAGCTCTCCACCGGCTCCGCCATCTGGAGGCGGCACCACTACTCCGAGTCCACCGTCTCGGAGCTCGCCATCTCCTCCTAACAGCTCGAATCGAACCACGCCGTCGTCGAACTCCTCTCCGCCCTCGTCATCGTCGTCGAGTATTTCGACTGGCGTCGTCGTCGGAATCGCCGTCGGGGCCGTGGCTGTTCTTCTGGTGTTGAGCATTCTGTGCATATGCTGCAGGAAGAAGAAGAGAAGACGCGATGAGGAGTACTATGTTCCTCCTCCGCCGCCGCAGCAACCGCCGCGGGGACCCAAAGATGACCCTTATGGTGGACCCCCACGTCAATGGCAACACAATGCTCCCCCTCCTTCAGATCATGTAATCTCAGTGGTTCCTAAGCCATCACCTCCACCCCCTGTTGCATCAAGACCACCAGTCCATTCACCGGTTTATGTTGCGCAACCGCCTCCTCCTCCTCCTTTCATAAGCAGCAGTGGTGGGTCTGGATCAAACTATTCAGGTGGTGAGCCACTTCCACCTCCTTCTCCTGGCATGTCTCTGGGCTACTCAAAGAGCAATTTTTCATATGAGGAGTTGGCACGGGCAACAGATGGTTTCTCTGATGCCAACCTCCTTGGACAAGGTGGATTTGGATATGTGCACAGAGGAATTCTCCCCAATGGTAAGGAGGTGGCTGTCAAGCAGCTAAAGGCTGGAAGTGGGCAAGGGGAGCGTGAGTTTCATGCTGAAGTTGAGATAATTAGCCGTGTTCATCACAAACATCTTGTTTCTTTGGTTGGATACTGTAGCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAATACATTGGAATTCCACTTACATGGAAGAGGGCGTCCCACCATGGATTGGCCCACAAGACTACGAATTGCCTTAGGAGCTGCAAAAGGACTGGCCTATCTTCATGAAGATTGTCATCCTAAGATTATCCATCGTGATATCAAATCTGCCAACATCCTTCTGGATTTTAAGTTTGAAGCAAAGGTATGTTCTGTTGTGTGTTCCTGGCAGGTTGCAGATTTTGGTCTTGCAAAGTTTTCTTCCGATGTCAATACTCATGTTTCTACTCGAGTGATGGGCACCTTTGGGTATCTGGCTCCAGAATATGCATCTAGTGGAAAACTTACAGAAAAATCAGATGTTTTCTCCTATGGAGTCATGCTTCTTGAGTTAATCACTGGACGGCGACCAGTTGATAAAACTCAAACTTTCATGGAGGATAGTTTGGTAGACTGGGCTAGGCCTTTGCTCACTCGTGCTTTGGAAGAAGATAATTTTGATTCTCTGATAGACCCAAGGCTGGAGAATGAATATGATCCTAATGAGATGGCTAGAATGGTGGCATGTGCTGCGGCTAGCACACGTCATTCAGCAAAACGTCGACCAAAGATGAGCCAGGTTGTCCGTGCTCTGGAAGGAGATGTGTCTCTAGCAGATCTTAATGAAGGAATCAGACCTGGACACAGCACTATGTACAGTTCTCATGAAAGCTCAGATTATGATACTGCACAATACAGAGAAGACATGATAAAGTTCAGAAAAATGGCACTGGGAACTCAGGAGTATGCTGGCAGCAGTGAATACAGTGCAGCTACAAGTGAGTACGGTTTAAACCCATCTGGCTCAAGCAGTGAAGCGCAGAGCCGCCAAACCACCCGGGAAATGGAAATGAGAAGAATGAAGAACAGTCAGGGTTTCAATGGAAGCTCCTGA	2058	0.5238	MSTAPAPSSPPGNNSTAPPPSTPATPSAPPPATPSAPPPATPSSPPPATPSSPPPATPSSPPPATPSSPPPATPSAPAPATPSTSPPAPTTPSTSPPAPATPSSSPPAPPSGGGTTTPSPPSRSSPSPPNSSNRTTPSSNSSPPSSSSSSISTGVVVGIAVGAVAVLLVLSILCICCRKKKRRRDEEYYVPPPPPQQPPRGPKDDPYGGPPRQWQHNAPPPSDHVISVVPKPSPPPPVASRPPVHSPVYVAQPPPPPPFISSSGGSGSNYSGGEPLPPPSPGMSLGYSKSNFSYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFHAEVEIISRVHHKHLVSLVGYCSTGSQRLLVYEFVPNNTLEFHLHGRGRPTMDWPTRLRIALGAAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVCSVVCSWQVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDKTQTFMEDSLVDWARPLLTRALEEDNFDSLIDPRLENEYDPNEMARMVACAAASTRHSAKRRPKMSQVVRALEGDVSLADLNEGIRPGHSTMYSSHESSDYDTAQYREDMIKFRKMALGTQEYAGSSEYSAATSEYGLNPSGSSSEAQSRQTTREMEMRRMKNSQGFNGSS.	686

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g03510	685	Gene3D	Phosphorylase Kinase; domain 1	285	379	-	-
	Seca9g03510	685	FunFam	proline-rich receptor-like protein kinase PERK1	282	379	-	-
	Seca9g03510	685	SUPERFAMILY	Protein kinase-like (PK-like)	278	586	IPR011009	-
	Seca9g03510	685	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	424	436	IPR008271	GO:0004672\|GO:0006468
	Seca9g03510	685	ProSiteProfiles	Protein kinase domain profile.	304	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca9g03510	685	MobiDBLite	consensus disorder prediction	184	284	-	-
	Seca9g03510	685	FunFam	Proline-rich receptor-like protein kinase PERK1	380	597	-	-
	Seca9g03510	685	Gene3D	Transferase(Phosphotransferase) domain 1	380	596	-	-
	Seca9g03510	685	MobiDBLite	consensus disorder prediction	1	152	-	-
	Seca9g03510	685	ProSitePatterns	Protein kinases ATP-binding region signature.	310	332	IPR017441	GO:0005524
	Seca9g03510	685	MobiDBLite	consensus disorder prediction	128	152	-	-
	Seca9g03510	685	MobiDBLite	consensus disorder prediction	11	127	-	-
	Seca9g03510	685	Pfam	Protein tyrosine and serine/threonine kinase	309	584	IPR001245	GO:0004672\|GO:0006468
	Seca9g03510	685	MobiDBLite	consensus disorder prediction	190	206	-	-
	Seca9g03510	685	SMART	serkin_6	304	549	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca9g03510	685	MobiDBLite	consensus disorder prediction	642	665	-	-
	Seca9g03510	685	MobiDBLite	consensus disorder prediction	642	685	-	-
	Seca9g03510	685	MobiDBLite	consensus disorder prediction	225	261	-	-
	Seca9g03510	685	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	162	648	IPR047117	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g03510	Seca-Chr9	53435491	53440381	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g03510	120	668	Trihelix Transcription Factor Family	AT1G70460	48.736	8.80e-169	499

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Seca9g03510		PK_Tyr_Ser-Thr	2.3e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g03510	-		-	gmx:100781944	833.558