LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g03498	ATGGAGCAGAACAACAACAACGTGATCGCACCGTTCGTTGTGAAGACTTACCACATGGTGAACGATCCCACCACCGATAACCTCATAACGTGGGGCCCATCTAACAACAGCTTCATCGTCCTCGACCCCCTTGATTTCTCTCACTCCCTCCTCCCTGCTTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGTTTCAGAAAGGTGGATCCGGATCGATGGGAATTTGCGAACGAGTGGTTCCTACGAGGGCAGAAGCACTTATTGAAGAACATAGTGAGGAGGAAACAGGGCAGTGGTTGTGGGAGGAATAACCATAATAATTATTCGCATTTTTTTCATCAGGGGAAGCTTGAAGACTTGGATGATGAAGCTATGGTGATGGAGATAGCGAAACTGAAGGAGGAACAGAAGGCGCTTGAGGAGGAGCTTCAAGGGATGAACAAGAGGTTAGAGACAACAGAGAAACGACCCCAACAGATGATGGCTTTTCTCTGCAATGTCGTCGAGGACCCTCAAGTTCTCTCAAGAATACTCCTCGAGAGGGAGAAGAAGCAGCTCGCCGAGAAGAAGAAACGGCGGCTAATACCGCCGGCGACTTCCTCTTCCTCCTCTTCCGGCATGGCGGCGACGAATTCCGTCAAGACAGAGTTCGAGGATGATGAAGCGACCGTGGGCAATATGATATCTTCATCGCCGGAGACAGGTTTTGAAATTGATAATTTGCGCCGTGCGCCGCCGCAGGAGGTGTCGCCGGCGGTTTGGTGGGGGCAGACACAAGGGGTGTGGGTGGATGATAGGGCTCGGATTGGCCAGCAGGGTTACGGTTATGATTGCGCCGCCGCTCCGACGCCGTTGACGGTGGTGTCTCCGTCGCCGGCGCAGCCGATCGGAGGAAGCTATTTCGGGTGTGAGAATAGTGATAATAAAGGGCGTGTGAGCATTTTTAGTGAAATGGCGGCGGAGAATAGTTCTCTGCCACCTTATCCGTTTTCGCTGTTGGAAGGTGGCTTTTAG	1035	0.5208	MEQNNNNVIAPFVVKTYHMVNDPTTDNLITWGPSNNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRRKQGSGCGRNNHNNYSHFFHQGKLEDLDDEAMVMEIAKLKEEQKALEEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQVLSRILLEREKKQLAEKKKRRLIPPATSSSSSSGMAATNSVKTEFEDDEATVGNMISSSPETGFEIDNLRRAPPQEVSPAVWWGQTQGVWVDDRARIGQQGYGYDCAAAPTPLTVVSPSPAQPIGGSYFGCENSDNKGRVSIFSEMAAENSSLPPYPFSLLEGGF.	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g03498	344	SUPERFAMILY	"Winged helix" DNA-binding domain	9	101	IPR036390	-
	Seca9g03498	344	Gene3D	-	3	102	IPR036388	-
	Seca9g03498	344	SMART	hsfneu3	8	101	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca9g03498	344	PRINTS	Heat shock factor (HSF) domain signature	50	62	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca9g03498	344	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca9g03498	344	PRINTS	Heat shock factor (HSF) domain signature	12	35	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca9g03498	344	MobiDBLite	consensus disorder prediction	195	245	-	-
	Seca9g03498	344	Coils	Coil	129	163	-	-
	Seca9g03498	344	FunFam	Heat stress transcription factor B-4	4	102	-	-
	Seca9g03498	344	MobiDBLite	consensus disorder prediction	203	219	-	-
	Seca9g03498	344	ProSitePatterns	HSF-type DNA-binding domain signature.	51	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca9g03498	344	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	226	IPR027725	-
	Seca9g03498	344	Pfam	HSF-type DNA-binding	12	101	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g03498	Seca-Chr9	52045015	52046396	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g03498	8	201	HSF	AT3G24520	65.152	8.36e-87	263

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Seca9g03498		HSF_DNA-bind	2.6e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g03498	K09419		-	gmx:100794896	427.172