Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03496 ATGGTTGACATTAAAAGGATCGACATTACTTCCTTGAGCAATGAGGCAGTGATGAATTATCATTTCCCAAACATAGATGTGGCCTTTTCATTTTATGAATGGTTTGTAGAATTGAAAGGTTTTGCTCCACGCAGACACAAGTCTGTGAAAAACTCTAAAAGTGAAGTTGTGGAGAAGAACTTTGTGTGTTCTCGAGCGGGTTACCGTGATAAACGACACTTAAGTAGGAAGGATCATAAGCGTGAGCCAAGGCCTCAAACTAGGTGTGGTTGTACAACTAAGTTTGTTGTCAGAGTTTCAGGAAGCGGTCGTTGGTTCGTAAAAAAATTTTCTAACAAGCACAACCATGACCTTCCGAGTGAGAAGTTTGTGAAGATGATGCCGACATACAGGAAGATGAATGAGTTTGATATAGTGCAGATGAACGAGATGAGAAAAGTTGGAATTAGCACTAGACACATATATGGATCGTTTACAAAGCAGGCTGGGGGATATGAGAGAATTGGCTTTAAAAAGCAGGATATATATAATGAAATTGGCTATAAAATATTTTAG 555 0.3874 MVDIKRIDITSLSNEAVMNYHFPNIDVAFSFYEWFVELKGFAPRRHKSVKNSKSEVVEKNFVCSRAGYRDKRHLSRKDHKREPRPQTRCGCTTKFVVRVSGSGRWFVKKFSNKHNHDLPSEKFVKMMPTYRKMNEFDIVQMNEMRKVGISTRHIYGSFTKQAGGYERIGFKKQDIYNEIGYKIF. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03496 184 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 13 170 - -
Seca9g03496 184 Pfam FAR1 DNA-binding domain 30 118 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03496 Seca-Chr9 51890988 51891542 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g03496 FAR1 3.4e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03496 - - mtr:112420053 177.948