Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03475 ATGGCTTCTTCAATTCGTCCTTCACTCTCTTCCTTCATGTTACCTTCTCTCTCTTCCTGCAACCCTTCTCAAAGGCTCTCTCTTTTTCATCTTGGTAGCGGTGTTAGACAGTACCATAATTTTGGTCTGAAAGCATCCAGATTATTGAGACATGATGGTAGCTGCATGAAAGTGATGGCATCTGGGAACCTGTCCCCAGTTGCTACCCAAGAAAGTGTACTAGATTGGGTCAAACAGGACAAGAGAAGAATGCTTCATGTTGTTTATCGTGTTGGGGACTTAGACAAGACCATAAAATTTTATACAGAGTGCCTGGGAATGAAGGTGCTCAGAAAGCGAGACATGCCAGAGGAGAGATATACCAATGCCTTTCTTGGATATGGGCCTGAGGATGCACACTTTGTTATTGAACTGACATACAATTATGGGATTGACAAGTATGACATTGGAACTGGATTTGGCCATTTTGGTATTGCTATTGATGATATTTCAAGAATAGTGGAAATTGTAAGAGCAAAGGGTGGAAAAATAATTAGAGAGCCTGCTCCTGTCAAGGGAGGCAGCTCAACAATTGCAGTTATTGAAGATCCTGATGGTTATGAATTTGAACTTTCGGAAAGGGCTCCCTCTCCTGAGCCTTTGTGTCAAGTAATGCTTCGGGTGGGTGATCTTGATCGTTCCGTAAAATTTTATGAGAAGGCTCTTGGTATGCAGCTACTTCGTACACGAGATAATCCAGAATCCAAGGTACCATGGCATCCTTGTTGTTATATATTTTGGCAATGGAATCTTTTTTGTAACAAATATGCCTAG 813 0.417 MASSIRPSLSSFMLPSLSSCNPSQRLSLFHLGSGVRQYHNFGLKASRLLRHDGSCMKVMASGNLSPVATQESVLDWVKQDKRRMLHVVYRVGDLDKTIKFYTECLGMKVLRKRDMPEERYTNAFLGYGPEDAHFVIELTYNYGIDKYDIGTGFGHFGIAIDDISRIVEIVRAKGGKIIREPAPVKGGSSTIAVIEDPDGYEFELSERAPSPEPLCQVMLRVGDLDRSVKFYEKALGMQLLRTRDNPESKVPWHPCCYIFWQWNLFCNKYA. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03475 270 ProSitePatterns Glyoxalase I signature 1. 216 237 IPR018146 GO:0004462|GO:0046872
Seca9g03475 270 Gene3D - 211 262 IPR029068 -
Seca9g03475 270 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 84 204 IPR004360 -
Seca9g03475 270 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 216 245 IPR004360 -
Seca9g03475 270 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Seca9g03475 270 NCBIfam lactoylglutathione lyase 83 207 IPR004361 GO:0004462|GO:0046872
Seca9g03475 270 ProSitePatterns Glyoxalase I signature 1. 86 107 IPR018146 GO:0004462|GO:0046872
Seca9g03475 270 CDD GlxI_Ni 84 204 - -
Seca9g03475 270 ProSitePatterns Glyoxalase I signature 2. 150 162 IPR018146 GO:0004462|GO:0046872
Seca9g03475 270 Gene3D - 54 209 IPR029068 -
Seca9g03475 270 PANTHER LACTOYLGLUTATHIONE LYASE 60 250 - -
Seca9g03475 270 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 213 270 IPR037523 -
Seca9g03475 270 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 83 207 IPR037523 -
Seca9g03475 270 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 82 245 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03475 Seca-Chr9 51300616 51303603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03475 84 204 Calmodulin-binding Proteins AT1G08110 29.452 7.76e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03475 K01759 - gmx:100802155 431.795