Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03473 ATGAATCAACTTGGTATTAGCCTCTTGGTTCTCTCAATCTCATTCTTCTTCCATGTTAGAGCACAGACACAAAGTGCACCTTCACAAGATGCTATCTCTAATTTCCAACCAAGCCTTGCTGTTGTTATAGGAATCCTTGGTCTCATGTTTTCAGTAACATTTGTTCTTCTCATGTTTGCCAAATTCTGTCATCGAAATGGATCAATTTCTTTTGGAGCCCCAGAAAGTCAACCAGCACTTAACAGATCAAGGTCAAGATTTTCAGGAATTGACAAGACTGTCATAGAATCACTCCCTTTCTTCAGATTTTCATCTCTCAAAGGATCAAAGGAAGGCCTTGAATGTGCAGTGTGTCTATCAAAGTTTGAAGATATAGAAATTCTCAGGCTATTGCCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGATCACTGGCTTGAAAAACACTCAACTTGTCCTATTTGCAGGCACAAGGTCAACCCTGAAGACCAAACAATTTTCACATATTCAAACAGTTTAAGGCTTCTAGCAAACCAATCAGGTCTCGGTGAAGAATCCAACATAGAGATCTTTGTCCAGAGAGAGGAAGAAAATCATGGTTCATCAAGATTCAGTATTGGAAGCAGCTTTAGGAAAATTGGAAAAGATGTTATTAAGGAAGAAGAATTGCCTATCCAACAAGGAGCAGAAGAAGAAAGTGATGGTAACAAAAAGGCCTATCATAAACACAATCACAGGATTACTATATCTGATGTTGTGTTCAAGCATAGGTGGAGCAACGTGAGCTCTTCAGACCTCATGTTTTTGAATTCAGAGATGCTTAATGCTACTTCAAGTGACAGATTCAACAACTTTGAAGCAAATGTTGACTTGGTGCCAAATACAAGAGGAGTAGTAGAAAATGAGCAAATTATGAACATCAAGGAGGAGATGGAGAGGAAGCTTTCCTTTGAGAGCAAAGTTAGTGCACTAAACAAGATTAAATCAATTTCAGATAAGGATCCTCCTTTTACATCAGATTCTGCTGGAAATTTTAGTCATGTACCAAAGTATGTGAGTCCAGGTGAGAACAGATCAATGTCAGAAATCACAGCTGTCTCTAGATTTGGAGATTTAGGAATGAAGAAAAGGGTCTATGAAAATTCTTCTATGCTTGAAAATAACCTTAAAGAGGAAAGAATGAGGCAGCTTTGGTTTCCAATTGCCAGAAGAACAGCTCAATGGTTTGTGAATAGAGAAAGAAGATCTCAGCAATCTCAGAACAAACAAGAGCAATTAGATGTGTAA 1290 0.3798 MNQLGISLLVLSISFFFHVRAQTQSAPSQDAISNFQPSLAVVIGILGLMFSVTFVLLMFAKFCHRNGSISFGAPESQPALNRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHIDCIDHWLEKHSTCPICRHKVNPEDQTIFTYSNSLRLLANQSGLGEESNIEIFVQREEENHGSSRFSIGSSFRKIGKDVIKEEELPIQQGAEEESDGNKKAYHKHNHRITISDVVFKHRWSNVSSSDLMFLNSEMLNATSSDRFNNFEANVDLVPNTRGVVENEQIMNIKEEMERKLSFESKVSALNKIKSISDKDPPFTSDSAGNFSHVPKYVSPGENRSMSEITAVSRFGDLGMKKRVYENSSMLENNLKEERMRQLWFPIARRTAQWFVNRERRSQQSQNKQEQLDV. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03473 429 Pfam Ring finger domain 114 157 IPR001841 -
Seca9g03473 429 CDD RING-H2_EL5-like 114 157 - -
Seca9g03473 429 FunFam RING-H2 finger protein ATL43 90 164 - -
Seca9g03473 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 415 - -
Seca9g03473 429 SUPERFAMILY RING/U-box 94 163 - -
Seca9g03473 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 166 IPR013083 -
Seca9g03473 429 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Seca9g03473 429 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03473 Seca-Chr9 51271289 51272578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03473 13 424 C3H Transcription Factor Family AT4G28890 49.776 4.98e-118 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03473 K10664 - gmx:100803207 663.299