Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03469 ATGGTACCCAAAACAGGGGAATTAAGTCTTGAAGTTTCAACAAACGACCCAGTGAGCAACGACATTGTTGCCCAAAATCCTGAAAGGGTTGAAACAACGGTGCAGAGAAGAACTAGCTTAAGGCTTCAAAACCGGCCTAAGGCTCACTATGGCAGTGATACTAATACGAAGAGGCCAATGAATGACGCTAATGGGGACCATTCCGATGAGAAGAGAACAAAATTCAAACCTTCCATGCAACAAGAGGCATTGGCTAAGGGTGAGAATTGTATCAGAGACACATGGTCTCAGACATGGGGCTGTGGAGGGACGTGTTTGGTGAGCAGAGGTAATGGTCATTCCAGTTCAACACTTGTTTTTGATGAACTGGACTTCAGAGGTGTTTTAGCAGTGAAAGAATCGTTGAGGCTTGCCAATCTCTCGGAACTTCAATCTTCTGAGGATAAACAGAATAGTAGCAAGAAGATAGCTAAAGATTATCAAGAAGTATCCAAACTTTTAAATGCTAATAAGGTCGATAAAAATTGGGTTGTTGAGAAGCACATTCCTGGATTTACAGTATGCGAGTATCTTGTAAAGAAGCTGAAAAGTTTGGCGATGTCGAGTGTAGAGAAGGTCTGTTTTTGTGAAGGGAGTATATCTGCAGCTCCGTATATTTCTCCAAGTTTGGTTGTCAAAGACATAAGCAATGGCCAGGAAGCTATATGTGTTCCTGCTACCAATGAGTATGACAATCCTCCAGTTGCACCTCCTGGTTTTACGTATATCACCTCTGTCAAAGTTGCAAGTGACGTGAAAGTACCACATAGACCCAATGGATGCAAATGCCAAGGAACTTGTAGAAATACAAGGAATTGCTCTTGTGCCAAACATAATGGCTCCGAGTTTCCCTATGTTCGTGGTGGTGACAGATTGAAGGAAGCTAGGGATGTTTTGTTTGAATGTGGACCAAAATGTGGATGTGGACCTGATTGTGGTAACAGAATTTCTCAAAAGGGTTTGAAGTACAGGCTTGAGGTTTACCGTACTGCCAACAAAGGGTGGGCTGTTAGAACATGGGACTTTATTCCTTCTGGTGCACCAGTTTTGGAATATACTGGTGTACTTCGCAGAATTGATGAGTTAGATAAATTAACCGAGAATGAATATATATTTGAAATTGATTGTTTGCAAACAATGAATGAAGTAGAGGGACGGGAGTATTTTTTTCAGAGGCGGTTGCGTAGTGTATCACTACCTACAAAAACTTCAGCTGATGAGCCAATGAAAAACAGTCCTGAGTTCGGCATAGATGCTGAATCTTTTGGTAATGTTAGTAGGTTCATCAACCACAGTTGTGAGCCAAACCTCTTTGTGCAGTGTGTTCTGAGCTCCCACCATGATATCAGTTTAGCTCGGGTGGTGTTATTTGCTGCAGATGACATACCTCCTTACCAAGAACTGACATATGACTATGGATACATACTTGATAGTGTTGTTGGTCCGGATGGAAAAATCAAGAAGTTACCATGTCACTGTGGTACAGATGACTGCCGTAAACGCTTATACTAG 1551 0.4197 MVPKTGELSLEVSTNDPVSNDIVAQNPERVETTVQRRTSLRLQNRPKAHYGSDTNTKRPMNDANGDHSDEKRTKFKPSMQQEALAKGENCIRDTWSQTWGCGGTCLVSRGNGHSSSTLVFDELDFRGVLAVKESLRLANLSELQSSEDKQNSSKKIAKDYQEVSKLLNANKVDKNWVVEKHIPGFTVCEYLVKKLKSLAMSSVEKVCFCEGSISAAPYISPSLVVKDISNGQEAICVPATNEYDNPPVAPPGFTYITSVKVASDVKVPHRPNGCKCQGTCRNTRNCSCAKHNGSEFPYVRGGDRLKEARDVLFECGPKCGCGPDCGNRISQKGLKYRLEVYRTANKGWAVRTWDFIPSGAPVLEYTGVLRRIDELDKLTENEYIFEIDCLQTMNEVEGREYFFQRRLRSVSLPTKTSADEPMKNSPEFGIDAESFGNVSRFINHSCEPNLFVQCVLSSHHDISLARVVLFAADDIPPYQELTYDYGYILDSVVGPDGKIKKLPCHCGTDDCRKRLY. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03469 516 Gene3D SET domain 218 516 IPR046341 -
Seca9g03469 516 SMART set_7 336 492 IPR001214 GO:0005515
Seca9g03469 516 MobiDBLite consensus disorder prediction 8 41 - -
Seca9g03469 516 SUPERFAMILY SET domain 217 487 IPR046341 -
Seca9g03469 516 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 148 509 - -
Seca9g03469 516 SMART PostSET_3 500 516 IPR003616 -
Seca9g03469 516 Pfam SET domain 347 486 IPR001214 GO:0005515
Seca9g03469 516 ProSiteProfiles Pre-SET domain profile. 272 333 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca9g03469 516 ProSiteProfiles SET domain profile. 336 486 IPR001214 GO:0005515
Seca9g03469 516 MobiDBLite consensus disorder prediction 60 77 - -
Seca9g03469 516 MobiDBLite consensus disorder prediction 1 80 - -
Seca9g03469 516 ProSiteProfiles Post-SET domain profile. 500 516 IPR003616 -
Seca9g03469 516 SMART preset_2 225 320 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca9g03469 516 Pfam Pre-SET motif 228 328 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03469 Seca-Chr9 51037763 51044732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03469 121 516 EF-hand Containing Proteins AT5G13960 51.861 1.31e-134 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca9g03469 SET 3.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03469 K11420 - lja:Lj0g3v0265609.1 525.783