Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03463 ATGGGTGGAACTGAAACACCTTCTTCACCCTCTTCATTGAGTTCAAGTTCTTGTGGTAACAAAGTTGAAGAGAAGAAAAGGAACAACAAGCGAGGAAGAGATCATGATAGCAATAGTAAGCATCCGGTTTACAGAGGAGTCCGAATGCGCACGTGGGGAAAATGGGTATCCGAAATCCGCGAGCCAAGAAAGAAGAACAGAATCTGGCTCGGCACTTTCGCCACCGCTGAGATGGCGGCGCGTGCACACGACGTCGCTGCGTTAACAATCAAAGGCTCCTCTGCTATTCTCAACTTTCCAGAACTCGCATCGTCACTGCCCCGACCCGCTTCCAACTCGCCCCGAGACGTTCAAGCTGCTGCGGCTAAAGCCGCTTACATGGAAGCCCCTCCGTCACCGGCGCCGTCGTCAGAGTCGGCGTCATCGACGCCGGAGGATCTGGGAGAGATAGTGGAGCTTCCGCCGTTGGGGACGAGTTTTGAATCGCCCGACCCGAGTGGGGAGTTCGTGTTTTTCGACCCGGTTGATGGGTGGACCTATCCTCATCCATGGTATCACGGCATTTATGAGGATGATAGTGGTGGGTACTTATCAATGCAAGACTCAGCAGATAACATGGTTCTCTCATTGTGGCCTTGA 639 0.5305 MGGTETPSSPSSLSSSSCGNKVEEKKRNNKRGRDHDSNSKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELASSLPRPASNSPRDVQAAAAKAAYMEAPPSPAPSSESASSTPEDLGEIVELPPLGTSFESPDPSGEFVFFDPVDGWTYPHPWYHGIYEDDSGGYLSMQDSADNMVLSLWP. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03463 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 157 - -
Seca9g03463 212 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Seca9g03463 212 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Seca9g03463 212 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Seca9g03463 212 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Seca9g03463 212 MobiDBLite consensus disorder prediction 20 43 - -
Seca9g03463 212 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Seca9g03463 212 MobiDBLite consensus disorder prediction 1 44 - -
Seca9g03463 212 MobiDBLite consensus disorder prediction 1 19 - -
Seca9g03463 212 MobiDBLite consensus disorder prediction 106 146 - -
Seca9g03463 212 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Seca9g03463 212 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Seca9g03463 212 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Seca9g03463 212 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03463 Seca-Chr9 50588285 50588923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03463 15 184 AP2-EREBP Transcription Factor Family AT5G11590 56.545 7.50e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g03463 AP2 6.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03463 K09286 - gmx:100804801 269.24