Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03448 ATGAAGTTCAATCCAAGGGTTTCAAGTAGCCGGCGCAAGAGCCGCAAGGCGCATTTCACGGCGCTGTCGAGCGTGTGTCGCGTGCTGATGAGTGCGCCACTCTCCACCAACCTCCGATCGAAGTATAACATGTTGTTAGTACCGGTTCGGAAGGACGACGAGGTGCAGGTAGTGAGGGGAAACCTACAAGGGCCGTGA 198 0.5606 MKFNPRVSSSRRKSRKAHFTALSSVCRVLMSAPLSTNLRSKYNMLLVPVRKDDEVQVVRGNLQGP. 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03448 65 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 56 IPR005756 GO:0003735|GO:0006412|GO:0015934
Seca9g03448 65 SUPERFAMILY Translation proteins SH3-like domain 8 64 IPR008991 -
Seca9g03448 65 Gene3D - 1 65 IPR014722 -
Seca9g03448 65 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 64 IPR005756 GO:0003735|GO:0006412|GO:0015934
Seca9g03448 65 NCBIfam 50S ribosomal protein L24 8 64 IPR005756 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03448 Seca-Chr9 49418263 49418460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03448 1 64 Cytoplasmic Ribosomal Protein Gene Family AT5G67510 75.000 2.45e-29 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03448 K02898 - gmx:100788996 93.5893