Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03431 ATGCTTTTGCAGTTCATATTAAGAAGGACTAATGCACTATTGTCGAATCACTTACCACCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCTATACAAACATTTTATACAATCCAAAAATGTAATGTCCAGTCTGTCTCCTCAAACACAGGTTAAACGGGCAATTACTGAAGAACGGAAGCAATCAAAGATTTTGGCCTATATAACAGCTCTCAAAAAGTTATGCAATCATCCAAAGCTCATCTATGATACCATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGTATTCGATTCTTCCCTCCGGAAATGTTATCTGGAAGGTCTGGGTCATGGACGGGAGGGCATGGAGCGTGGGTTGAGTTATCCGGGAAAATGCAAGTCTTAGCAAGATTACTCTCTCATTTACGTGAGAGAACAAATGATCGCATTGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTCGCTCAATTGTGTCGGGAACAAAGGTACCCTTACTTGAGGCTTGACGGCGCTACATCAATCAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGACCCATCTAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGGCTCAATCTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGGCAGAAGAAAAGAGTTTACATTTATAGATTTCTGAGTGCCGGAACGATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCGGGAGCAAACCGATAGCCTTGTGGAACAGGGTAACTTTCTATCGACAGAGGATCTTGGCGATTTGTTTACTTTTCGTGAGAACGTCAAGTCAGAGATTCACGAAAAAATGCGATGCAGTCGGTGCCGAGCATATGATGAGCCTCAAAGCACTGACCTCCTATCAACAATAGTTAATAGTGAATCTGATGAAGAAATCTCTGATATAGGTGGATTTGCAGAGATTGCAGGCTGCCTAGATAATTTAAGAAGATCAGAAAAGCAGGTAGGGACCCCATTGGAAGAAGATTTAAGTAGTTGGGGCCATCATTTTGCCCCAACTTCTGTGCCGGATGTTATCCTCCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTCTTTACAAACCAAGTTAACGGAAAGCTGGTACCCATTGAGTCCATAATCAGTCCCAAGCTACAGCAAAAGGAACCAAATAAGGAATTACTCAAGCAAAGGCAAAACTTCAAACAAAAATACACTCCCTTTGCTTTACATGATAAACTGCAACCGCGGTCTTCTTCTGGTGTTGCTAGCACGTCATGCTCCTCTCCCAATGCTTGGACGAAGGAAGCGCAAAATTCTGTCGGAATTACCAAAAATATCTCCATGAATGTAGCTCTAAAGACCGAGCACTCTCTTGTAAATAAAGTATTACCACAGAAAAGATCGTGTACCGCTAATACCAATGATGATTTTGAGTAA 1566 0.4234 MLLQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVMSSLSPQTQVKRAITEERKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMQVLARLLSHLRERTNDRIVLVSNYTQTLDLFAQLCREQRYPYLRLDGATSISKRQKLVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQREQTDSLVEQGNFLSTEDLGDLFTFRENVKSEIHEKMRCSRCRAYDEPQSTDLLSTIVNSESDEEISDIGGFAEIAGCLDNLRRSEKQVGTPLEEDLSSWGHHFAPTSVPDVILQASAGDEVTFVFTNQVNGKLVPIESIISPKLQQKEPNKELLKQRQNFKQKYTPFALHDKLQPRSSSGVASTSCSSPNAWTKEAQNSVGITKNISMNVALKTEHSLVNKVLPQKRSCTANTNDDFE. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03431 521 SMART helicmild6 163 247 IPR001650 -
Seca9g03431 521 CDD SF2_C_SNF 130 258 - -
Seca9g03431 521 PANTHER SNF2/RAD54 FAMILY MEMBER 4 431 - -
Seca9g03431 521 FunFam DNA repair and recombination protein RAD54-like 124 293 - -
Seca9g03431 521 Pfam Helicase conserved C-terminal domain 137 246 IPR001650 -
Seca9g03431 521 Pfam SNF2-related domain 2 87 IPR000330 GO:0005524|GO:0140658
Seca9g03431 521 Gene3D - 9 328 IPR027417 -
Seca9g03431 521 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 136 297 IPR001650 -
Seca9g03431 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 411 IPR027417 -
Seca9g03431 521 Gene3D - 31 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03431 Seca-Chr9 47999269 48004909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03431 127 305 RAD5 or RAD16-like Gene Family AT5G43530 35.000 3.33e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca9g03431 Helicase_C 3.3e-14 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03431 K10875 - gmx:100781631 849.736