Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03430 ATGAGAATGGAGGAAGAGGAAGTGGAAGAGGAAGACGAATTGGTGTCACGCTCTTCTGATTCAGGTGATGATGATCTTCAAGTTGAACAACGGAAATCGCAGAATGTGGAAGCTCTCCTCGGGGGCAACCTCATCGTGAAGAGACAATCGTTGTTGCCGCGAGTTCTATCAGTAGTATCGCAGGGAGCGGCTGTTTGCAGAAAACCCTTTAAACCTCCATCCTCTAAATCTGATGCTTACAACAATCAAGACCTTACTCGTAGGCTTTCTGCTCGCAAAAGGTTTGTCCCGTGGCGCTCTTCCTCTTCTCCTAGACCCCTGTTGGAGTTGAATTTGAATTTGAATTTGAATGTTGATGTTGATGTTGCTGAGGAGTTGAAACCATCCTTGCCCCCTGGTATTGATCCTCTAGTACTGTGGCACCCTCAACACTCTGAGGATGAGGCTTCTAATCTTAATCTGACAACAATAACTGTTGACCCATTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTTATGTTTGATTGTGTCGCTGGACTAAGTAGCACACCAAATGTACACGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACATTGCAGTCAATCACATTACTATATACTCTTATTTGTCAAGGGTTTGATGGGAAGCCAATGGTTAGAAAGTCCATCATTGTGACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAAATTAAGAAGTGGGTTGGAGAAAGAGTTCATCTTGTTGCTCTATGTGAAAGCACTAGAGAAGATGTTGTCTCTGGGATTGACAATTTTATAAGTTCCAAAAGCAATTTACAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCATCAAAATTTAGCTCTAGTGGTTCATGTGATCTTCTCATCTGTGATGAGGCTCATAGGCTGAAAAATGATCAGACAATAACCAACCGGGCATTGGCTGCTCTCCCATGCAAGCGTAGAATTTTGTTGTCAGGAACTCCCTTGCAAAATGACTTAGAAGAATTCTTTGCAATGGTCAACTTTACTAATCCTGGAATATTGGGTGATATTGCACATTTTCGACGTTACTATGAGGCACCAATTATTTGCGGAAGAGAACCTGCTGCCACTGCAGAAGAGAAGAAGCTAGGAGCTGAGCGCGCTGTGGAATTAAGTGTCAAAGTTAATGGGGTAATATTTTTTCTTGGTCTATGCATGAGAATTAAATTTCACTCTGTGCTTTAG 1263 0.4283 MRMEEEEVEEEDELVSRSSDSGDDDLQVEQRKSQNVEALLGGNLIVKRQSLLPRVLSVVSQGAAVCRKPFKPPSSKSDAYNNQDLTRRLSARKRFVPWRSSSSPRPLLELNLNLNLNVDVDVAEELKPSLPPGIDPLVLWHPQHSEDEASNLNLTTITVDPLLVRFLRPHQREGVQFMFDCVAGLSSTPNVHGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKSIIVTPTSLVSNWEAEIKKWVGERVHLVALCESTREDVVSGIDNFISSKSNLQVLIVSYETFRMHSSKFSSSGSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPAATAEEKKLGAERAVELSVKVNGVIFFLGLCMRIKFHSVL. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03430 420 Pfam SNF2-related domain 170 377 IPR000330 GO:0005524|GO:0140658
Seca9g03430 420 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 358 IPR014001 -
Seca9g03430 420 CDD DEXHc_RAD54 167 405 - -
Seca9g03430 420 SMART ultradead3 163 366 IPR014001 -
Seca9g03430 420 Gene3D - 138 406 IPR038718 -
Seca9g03430 420 PANTHER SNF2/RAD54 FAMILY MEMBER 59 404 - -
Seca9g03430 420 MobiDBLite consensus disorder prediction 1 18 - -
Seca9g03430 420 FunFam DNA repair and recombination protein RAD54 136 407 - -
Seca9g03430 420 MobiDBLite consensus disorder prediction 1 30 - -
Seca9g03430 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 403 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03430 Seca-Chr9 47996977 47999140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03430 193 374 RAD5 or RAD16-like Gene Family AT3G16600 28.302 2.09e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca9g03430 SNF2_N 2.2e-39 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03430 K10875 - gmx:100781631 630.557