Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03427 ATGTGCGTGTTATTATTTTTATCTTGTAATTTCTTGCTTCTGTCGCATTCGGTTGCTGCCCAAGAGCAAGTTGTGGCCCGATCCGAAAGAGAAGCATTGGAAATTATCATAGGTGGCGGAGGCGGAGGCGGTGGCTATGGCTATGGCCCTGCTCCTTCCCCTTCTCCAGATGAATGTCCTCCTCCCCCTCCCCCTCCCGAACCTGAGTGTCCTCCTCCCCCTCAACCACCTAAAATAACTAAGCCACCTCCACCCCCCACCATGACCAGGCTGCAGAAAGCTCGCAAAGTACTTCTAAAGTTCAAATTCAATATCGATGACCCAACTCGATACTTGAAGAACTGGAACAAAAGTACAGACACATGTAGCTTTAACGGGATTCGATGTGCCACATTTCCAAATACAAAAAATGAGAGAGCAGTTGCAGGATTGGACCTGAATGGAGCCAGGCTCTCTAGGGCCAAGGGTAGATCACCACTGAGCCTCTCCGGTATCTTAGACAAGATACCGGAGCTTACATTCTTCCACGTAAACTCTAACAACTTCACCGGTGACATCCCAAAGGAAATCCTCAAGTACAAGTACTTCTTCGAGTTAGACCTCAGTAACAACAAAATTCAGGGCGAGTTTCCGAAGGAAGTGCTTCAGTTGAAGCAACTGGTGTTCCTGGACCTCAGGTTCAACCATCTCTATGGCCCAATCCCACCAGAACTGTTTGGGTTGGATTTGGATGTGATTTTCATCAACGACAATAAGTTCAGCGGTCCTCTCCCTGATAATTTTGGGTCCACACCAGCCAGGTACCTCACTTTTGCAAACAACAAACTCACGGGTCAAATCCCCAGAAGCATTGGGAAAGCTTCCAAAACCCTCACGGAAGTGCTCTTCTTGGGCAATTACTTTGAAGGGTGCTTGCCCTTCGAAATTGGGTACCTCAAGAAGGCCACCGTCTTTGATGTCAGCAGAAACTGGCTAACTGGTCCCATCCCACACTCATTTGCCTGCTTGCAAAGCATTCAGTATCTCAATTTGGAGAGGAACCAGTTTTACGGAACTGTTCCGGAGATGGTGTGTCAACTACCAGGACTCCGCAATAATGGCAACCTCTCCCTAGCGGACAACTACTTCACGCAGGTGGGTCCTGCCTGCAGAGACCTCATAAAGGCCAAGGTGCTCGACGTCTCCAACAACTGCATCCTCGGCCTTCCAAATCAAAGATCATATGGAGAATGCGCTAAATTTTTCTACAACGCCAAGCAATGCCCAAATCCCAACTCATTCAATTACATCCCTTGTAAGCTCAAGAAAGGACACAACTACCAAGCCCAGGCCCAGGCCCAGACACCCCCTCCTGCCCCGCTAACTTACAAGTCTCTCAAACCTCATCGCCTCTGA 1395 0.4882 MCVLLFLSCNFLLLSHSVAAQEQVVARSEREALEIIIGGGGGGGGYGYGPAPSPSPDECPPPPPPPEPECPPPPQPPKITKPPPPPTMTRLQKARKVLLKFKFNIDDPTRYLKNWNKSTDTCSFNGIRCATFPNTKNERAVAGLDLNGARLSRAKGRSPLSLSGILDKIPELTFFHVNSNNFTGDIPKEILKYKYFFELDLSNNKIQGEFPKEVLQLKQLVFLDLRFNHLYGPIPPELFGLDLDVIFINDNKFSGPLPDNFGSTPARYLTFANNKLTGQIPRSIGKASKTLTEVLFLGNYFEGCLPFEIGYLKKATVFDVSRNWLTGPIPHSFACLQSIQYLNLERNQFYGTVPEMVCQLPGLRNNGNLSLADNYFTQVGPACRDLIKAKVLDVSNNCILGLPNQRSYGECAKFFYNAKQCPNPNSFNYIPCKLKKGHNYQAQAQAQTPPPAPLTYKSLKPHRL. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03427 464 Gene3D Ribonuclease Inhibitor 91 266 IPR032675 -
Seca9g03427 464 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 89 450 - -
Seca9g03427 464 Pfam Leucine rich repeat N-terminal domain 94 129 IPR013210 -
Seca9g03427 464 SUPERFAMILY L domain-like 94 402 - -
Seca9g03427 464 MobiDBLite consensus disorder prediction 44 89 - -
Seca9g03427 464 MobiDBLite consensus disorder prediction 53 89 - -
Seca9g03427 464 Gene3D Ribonuclease Inhibitor 267 428 IPR032675 -
Seca9g03427 464 MobiDBLite consensus disorder prediction 441 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03427 Seca-Chr9 47950971 47952365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03427 90 428 Trihelix Transcription Factor Family AT1G12040 40.762 2.89e-75 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03427 - - gmx:100781083 556.599