Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03420 ATGGATAATACAGATGATCTTTCGGCTGTTAAGTTGGATGATGAGAATGACCCTAGTTATGATGTTGGTCATGATGATAGTATTAGTGCAGATCCGTCGGATATTAGAGAAGAGAGCCAGGCTGCAGATATGGATGTTGGAGATGGACAGTATAAGAGGATAACAAATTTGACCAGTGATGATGTAATGGGTTTGGAGTTTGTAACTCAATATGCTGCTTTCAAATTTTATGAGGATTATGCTAAAGCCCATGGTTTTGTAGTAAGGAAGGATGATATAAGGAAGGATTTTAGGGGTAATACTGTGATGCGACAATTTGTATGCAATAGACAAGGATTGAGAAATAAAAAGCACTTCATGAGGGTAGACAGGAAAAGGGAGCACAGAGCAATAACCCGAACAAATTGTGGAGCTAAGCCTCGTGTACGTTTCAATCGCAAGAAATCAAAATGGATAGTGGTGTCTTTTTGA 471 0.3885 MDNTDDLSAVKLDDENDPSYDVGHDDSISADPSDIREESQAADMDVGDGQYKRITNLTSDDVMGLEFVTQYAAFKFYEDYAKAHGFVVRKDDIRKDFRGNTVMRQFVCNRQGLRNKKHFMRVDRKREHRAITRTNCGAKPRVRFNRKKSKWIVVSF. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03420 156 MobiDBLite consensus disorder prediction 1 44 - -
Seca9g03420 156 Pfam FAR1 DNA-binding domain 75 156 IPR004330 -
Seca9g03420 156 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 10 156 - -
Seca9g03420 156 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03420 Seca-Chr9 47899248 47899718 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g03420 FAR1 7.5e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03420 - - ccaj:109792835 172.94