Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03407 ATGGTGAGTTGGTTGCGGCGGGCGGTGGAGGTTTGCTTTGGACGGCGCGATGCTCTCATATGGCACTCCGACTCCGACCACTTCTCCATGGCCGTCACTCAAGCCAACTCCTCCCTCGAGGATCAGAGCCAAGTCTTTGTGTCCCCTTCCACCACTTACGTTGGCGTTTATGACGGCCATGGCGGCCCCGAAGCTTCTAGATTCGTCGCCAATCGTCTCCTTCCTTATTTGCACAATATATGTTATGTAGGATTGAGTAGCGAAGAAGGGGGTGTATCAGTGGATGTGATAAAAAAGGGATTTAGTGCGACGGAGGAAGAATTCTTGCATTTGGTGAAGCGATGTTTGCCCATAAGCCCCCATCTTGGTTCCGTGGGATCCTGCTGCCTTGTTGGTGCCATTTCTTCTGATAATAATGTTTTGTATGTTGCCAACCTCGGAGACTCCAGAGCAGTCCTTGGCAAGACAAACTCCAAGGCAGAGCGCTTATCAGTCGATCATAATGTCTCTGATGAGGAGATCAGGAAAGAGGTCGAAGCTCTTCATCCTCATGATTCACACGTTGTTCTTCATACCCGTGGTGTCTGGAGGATTAAGGGCATCATACAGGTGTCAAGATCTATTGGTGATGTGTATCTCAAGAGACCTGACTTCTACAGAGACCCGGTTTTTCAGCAATTTGGAAATCCCATTCCTTTGACTCTGACTCGTCCTGTAATGACAGCTGAACCTTCCATCACTGTTAGGGAGCTTCAACCGGAAGATCTCTTCCTCATATTTGCATCCGACGGACTCTGGGAACAATTAACTGATCAAGAAGCGGTTGACATTGTTTTCAAATATCCCAGAGCTGGAATTGCCAAAAGATTAGTGAGAGCTGCTCTTCAAGTAGCTGCAAAGAAGAAAGAGATCAGATATGATGACTTAAAGAAGATTGACAAGGGAATCAGACGGAATTTTCATGATGATATCACTGTTGTTGTCATCTATCTTGATCACCACAACCACTCTAAGCATCGCTCTACAACTGCTCCTGTTGACATTTACTCCCCAGACGACGAGGAAGCAGAACAGTGTATGCTCGCCGCAGTTGCCTAA 1098 0.4727 MVSWLRRAVEVCFGRRDALIWHSDSDHFSMAVTQANSSLEDQSQVFVSPSTTYVGVYDGHGGPEASRFVANRLLPYLHNICYVGLSSEEGGVSVDVIKKGFSATEEEFLHLVKRCLPISPHLGSVGSCCLVGAISSDNNVLYVANLGDSRAVLGKTNSKAERLSVDHNVSDEEIRKEVEALHPHDSHVVLHTRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPVFQQFGNPIPLTLTRPVMTAEPSITVRELQPEDLFLIFASDGLWEQLTDQEAVDIVFKYPRAGIAKRLVRAALQVAAKKKEIRYDDLKKIDKGIRRNFHDDITVVVIYLDHHNHSKHRSTTAPVDIYSPDDEEAEQCMLAAVA. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03407 365 CDD PP2Cc 27 331 IPR001932 -
Seca9g03407 365 Gene3D - 10 343 IPR036457 -
Seca9g03407 365 SMART PP2C_4 12 329 IPR001932 -
Seca9g03407 365 ProSitePatterns PPM-type phosphatase domain signature. 53 61 IPR000222 GO:0043169
Seca9g03407 365 ProSiteProfiles PPM-type phosphatase domain profile. 27 331 IPR001932 -
Seca9g03407 365 SUPERFAMILY PP2C-like 33 333 IPR036457 -
Seca9g03407 365 FunFam Probable protein phosphatase 2C 42 19 339 - -
Seca9g03407 365 Pfam Protein phosphatase 2C 49 300 IPR001932 -
Seca9g03407 365 PANTHER PROTEIN PHOSPHATASE 27 332 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03407 Seca-Chr9 47796518 47798432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03407 14 332 PP2C-type Phosphatase Gene Family AT3G51370 52.819 3.73e-123 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03407 - K01102 gmx:100812137 507.679