Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03402 ATGAGCTGCAACGGTTGCCGTGTCCTCCGAAAAGGTTGCAGTGAGGAGTGTTTGCTGAGAGATGGGTTAAAGTGGATAGAGAAGGCAGAAGAGCAGGGTCATGCCACCCTATTCGTCGCTAAGTTCTTCGGCCGTTCCACCCTCATGTCTTTCCTTTCCTCTGTACCTCCCAACCAAAGATCCGGTTTGTTTCGATCACTTGTGTATGAAGCAGTGGGACGTACAGTGAATCCAGTAAACGGAGCAGTGGGACTGTTATGGACTGGGAACTGGCACCTCTGCCAATTGGGGGTAGACAAACTTCTCAAAGGTGCCGCCTTCATTCATCATCATCACCGATATTCACAACACAGATCATTCAGAATGACAAGACGCCACAACAACAAACAGATCAAGAAGAAACCATCCCAATTATTGGAGTTGCCAACTACCACTACTACTGCCTCTGCCTCTGCCTCTCAAACCAACCTCCTTCCACTATTCCTCTCACCCTCACTTTAA 501 0.485 MSCNGCRVLRKGCSEECLLRDGLKWIEKAEEQGHATLFVAKFFGRSTLMSFLSSVPPNQRSGLFRSLVYEAVGRTVNPVNGAVGLLWTGNWHLCQLGVDKLLKGAAFIHHHHRYSQHRSFRMTRRHNNKQIKKKPSQLLELPTTTTTASASASQTNLLPLFLSPSL. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03402 166 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Seca9g03402 166 Pfam Lateral organ boundaries (LOB) domain 2 98 IPR004883 -
Seca9g03402 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03402 Seca-Chr9 47767147 47767752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03402 1 107 AS2 family AT5G67420 68.224 1.81e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca9g03402 LOB 6.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03402 - - gmx:100816269 189.889