Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03401 ATGCTGGCCCACAACAAGACAGAACCAGAACCAGAGAGTCAGAGTCAGAGTCACAAGTGCAGCATCTGCAACAAAACCTTTCCATCTTACCAAGCACTCGGAGGCCACAAGGCAAGCCACCGCAAATCCTCACCCGAAGCCGACACCACCATCGGAATCGGAAAGATGCATCAGTGTTCCATCTGTCACAAGGTCTTCCCCACGGGTCAGGCTCTGGGCGGCCATAAGCGATGCCACTATGACCGTGCTTTTGACTTGAATTTGCCACCAATCACTCCTCCTCAGGATCAGGACCAAACCCCTTAA 306 0.5294 MLAHNKTEPEPESQSQSHKCSICNKTFPSYQALGGHKASHRKSSPEADTTIGIGKMHQCSICHKVFPTGQALGGHKRCHYDRAFDLNLPPITPPQDQDQTP. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03401 101 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 45 IPR013087 -
Seca9g03401 101 SMART c2h2final6 57 79 IPR013087 -
Seca9g03401 101 SMART c2h2final6 18 40 IPR013087 -
Seca9g03401 101 ProSitePatterns Zinc finger C2H2 type domain signature. 20 40 IPR013087 -
Seca9g03401 101 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Seca9g03401 101 Pfam C2H2-type zinc finger 18 43 - -
Seca9g03401 101 Pfam C2H2-type zinc finger 57 81 - -
Seca9g03401 101 MobiDBLite consensus disorder prediction 1 20 - -
Seca9g03401 101 SUPERFAMILY beta-beta-alpha zinc fingers 17 79 IPR036236 -
Seca9g03401 101 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Seca9g03401 101 Gene3D Classic Zinc Finger 15 79 - -
Seca9g03401 101 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 9 90 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03401 Seca-Chr9 47747993 47748298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03401 9 81 C2H2 Transcription Factor Family AT3G19580 55.914 5.46e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca9g03401 zf-C2H2_6 2.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03401 - - aprc:113869798 119.012