Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03400 ATGGAGGAGGGTGGTGAGCGGATTTCGGAAGAATGGAGTTGTCTGAGTGGAGTGTACACAGCAGAGGAAGCTGACTTTATGACTCACTTACTTGATGATGTTTCCTTTTCTAATCATGCATTTTGGTCTGCCAATACCCATCATGAATCCACATTAATCAATTCTACTACTACTGCAAATAATAATACTAATTTGTTCTGTTTCTCCCAAGAGGGGACTACCTCCACTGATCATATTCATATCTTTCCCACTACAAGTAGTAATTTTGGCTCCATGGGGAATAGTAATACCGATTATACTTCTCACAACTTAAGCCAACACATACACCAAACCACTGATGATCAAGTAGTGTCAGGTCTTCCCCCACAGAAACCGGTTCTTGCTTTTCAGCCTAACCTTGAGTGTGAAATACTACTTTCTGAATCTGCGATAGAGGACCTGGACAACCCACCCAAAAGATTTAAGAGCTCAATCACAATGGATCAGGTCTCAGAGAACAGGAAGAATGCTAAATCAAAGAAGAATCCAACATCTGCTTCTAATTCTATGGAGCTTATAAAAGGAGGGGCATCTTCAACTTCAAAAGATTCAATTTGCAAATCAAAACCTAACAACAGAGGTCCTGCCACTGATCCACAAAGCCTTTATGCAAGAAGAAGAAGAGAAAGAATCAATGAAAGGTTGAAAGTTCTACAAAATCTTGTCCCTAATGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTCAAGTTTTTGCAACTCCAAATTAAGCTTCTGAGCTCTGACGATATGTGGATGTATGCTCCCATTGCTTACAATGGAATAAACATCGGACTTGACCTCAATATTAATTCCTTCAACAAAACAATCACAGCACAGCAATTAAACAGCAATTAG 912 0.3991 MEEGGERISEEWSCLSGVYTAEEADFMTHLLDDVSFSNHAFWSANTHHESTLINSTTTANNNTNLFCFSQEGTTSTDHIHIFPTTSSNFGSMGNSNTDYTSHNLSQHIHQTTDDQVVSGLPPQKPVLAFQPNLECEILLSESAIEDLDNPPKRFKSSITMDQVSENRKNAKSKKNPTSASNSMELIKGGASSTSKDSICKSKPNNRGPATDPQSLYARRRRERINERLKVLQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDMWMYAPIAYNGINIGLDLNINSFNKTITAQQLNSN. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03400 303 Gene3D - 210 265 IPR036638 GO:0046983
Seca9g03400 303 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 33 276 IPR045843 GO:0003700|GO:0006355
Seca9g03400 303 FunFam Basic helix-loop-helix transcription factor 209 266 - -
Seca9g03400 303 Pfam Helix-loop-helix DNA-binding domain 218 258 IPR011598 GO:0046983
Seca9g03400 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 274 IPR036638 GO:0046983
Seca9g03400 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 257 IPR011598 GO:0046983
Seca9g03400 303 MobiDBLite consensus disorder prediction 173 211 - -
Seca9g03400 303 CDD bHLH_AtIND_like 209 271 - -
Seca9g03400 303 SMART finulus 214 263 IPR011598 GO:0046983
Seca9g03400 303 MobiDBLite consensus disorder prediction 148 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03400 Seca-Chr9 47728670 47730131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03400 11 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 36.286 1.57e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g03400 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03400 - - gmx:100817334 228.794