Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03377 ATGGTTACCTCAAAACATTATTACTGGGCAACTCTGTTTGGGTTGCTAAGCCTTGCATCACAAGCAGTTCCTTCTCCTACTTACATCGGTTCTCACTGCAACAACAACACCACATACGCACCCAACAGCACACTGGCTGTCAATCTCAATGTTCTCCTCTATTCTCTCACCACCAACTCCTCCCAACAACAAGACGGTTACTATTTGACCATCATGGGCTTTGGAACCACCGACGCTGTCAACGGCATCTTTCTCTGCCGCGGCGACATCAACACCACCGTCTGTCAACAGTGTGTAACCACCGCCGCCAAAGAGATAACACGCCACTGCCCCAACCAAACGGAGGCCGTTATCTGGTACCAGGAGTGTTTGTTGCGTTACACAAACAAGTACTTCAAGTACTACAGCATCGAACCAAGATTGAACCCCATGGATGGCAACAACATCTCTGCCGTTGACTTTGAACGGTTCAACCAATCAGTTTTCACCTTGTTGAATGAGTTGGCAACGGAAGCGGCGAATTCACTGTCGGCCAAGAAGTTCGCCACCGGGGAACTGGAAGTGACGAAGTCTCAGACGGTTTATGGATCGGCGCAGTGCAGCACCGATTTAACGAGTGGTCAGTGTGAGATATGTTTACGAAACGCCATCGGAACTCTTCCCGCGTGCTGCAGCGCCAAACAGGGCGCAAGTGCTCTGCTTGCGTCCTGTATTGTCAGATACGAACCCTACCCATTTTACAATATAACTGGGACGCCTTCACCATCTTCTTCAGTTATTCAATTGACAGGGAAAAAAAAACTAGGAACAAAAGCAATAGTCATAATTGTTTTCCTGGCTTTTGTTCCGGTAATACTCTTAATTTTAGGATGCTATTGCCGGCGGAGGAGATTGAAGCAGAGACTTAGGACAATTCTAAAGGAAAATTGTAACTGGTTCAATATTTACATGTTTCCTTATATTGGTTTAGTTGGGGATGAACTGAAAACTTTGGAATCATTACAATTCACTTTGGCTACAATTGAAGCTGCCACAAACAAGTTTTCTCATGAGAATAAAATTGGCAGAGGAGGATTTGGTGTTGTCTACAAGGGTATTCTCTCTGATGGACGACAAATAGCAGCAAAGAAACTTTCAAGAAGCTCCGGACAAGGTTCAATAGAATTTAAAAATGAAATTTTATTAATAGCTAAACTTCAACACAGAAATTTGGTGACCTTATTAGGATTCTGCTTGGAAGAACAAGAGAAAATGCTTATATATGAGTATGTGCCAAACAAGAGCCTCGATCACTTTCTATTCGATCCTCAAAAGCAAAGGGTGCTACATTGGTTTGAGCGTTATAAAATTATAGGAGAAATTGCAAGAGGAATTCTTTACTTACATGAGCATTCACGACTTAAAGTTATACATCGAGATCTCAAACCTAGCAATGTATTGTTAGACGATAATATGAATCCAAAAATATCAGATTTTGGTATGGCAAGAATAGTAGCAATTGATCAGGAACAAGGGAGCACTAATAGAATCGTCGGAACATATGGTTACATGTCTCCAGAATATGCAATGCATGGACAGTTTTCTGAGAAGTCAGATGTATTCAGTTTTGGAGTCATAGTTCTTGAGATAGTTAGTGCAAAGAGAAATGCTCGTCCAATTGAATCACAAGATTTTGAAGATCTCTTAAGCATTGCTTGGAGACATTGGAGAAATCAAACACCATTAGAAATACTGGACCCGAATTTAAAAGACTCATTTTCCCACAGTGAAGTTATTAAATGCATTCAAATTGGTTTATTATGCGTCCAAGAAAATCCAGAGGATAGACCTACAATGGCGAAAATTGTTTCATACCTTAGTAGCCTTTGA 1869 0.4147 MVTSKHYYWATLFGLLSLASQAVPSPTYIGSHCNNNTTYAPNSTLAVNLNVLLYSLTTNSSQQQDGYYLTIMGFGTTDAVNGIFLCRGDINTTVCQQCVTTAAKEITRHCPNQTEAVIWYQECLLRYTNKYFKYYSIEPRLNPMDGNNISAVDFERFNQSVFTLLNELATEAANSLSAKKFATGELEVTKSQTVYGSAQCSTDLTSGQCEICLRNAIGTLPACCSAKQGASALLASCIVRYEPYPFYNITGTPSPSSSVIQLTGKKKLGTKAIVIIVFLAFVPVILLILGCYCRRRRLKQRLRTILKENCNWFNIYMFPYIGLVGDELKTLESLQFTLATIEAATNKFSHENKIGRGGFGVVYKGILSDGRQIAAKKLSRSSGQGSIEFKNEILLIAKLQHRNLVTLLGFCLEEQEKMLIYEYVPNKSLDHFLFDPQKQRVLHWFERYKIIGEIARGILYLHEHSRLKVIHRDLKPSNVLLDDNMNPKISDFGMARIVAIDQEQGSTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIVLEIVSAKRNARPIESQDFEDLLSIAWRHWRNQTPLEILDPNLKDSFSHSEVIKCIQIGLLCVQENPEDRPTMAKIVSYLSSL. 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03377 622 FunFam cysteine-rich receptor-like protein kinase 10 424 622 - -
Seca9g03377 622 Gene3D Transferase(Phosphotransferase) domain 1 424 622 - -
Seca9g03377 622 Gene3D - 26 132 IPR038408 -
Seca9g03377 622 Gene3D - 143 246 IPR038408 -
Seca9g03377 622 SMART serkin_6 348 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03377 622 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 132 - -
Seca9g03377 622 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 30 621 - -
Seca9g03377 622 Pfam Salt stress response/antifungal 154 243 IPR002902 -
Seca9g03377 622 Pfam Salt stress response/antifungal 33 129 IPR002902 -
Seca9g03377 622 Pfam Protein kinase domain 349 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03377 622 ProSitePatterns Protein kinases ATP-binding region signature. 354 377 IPR017441 GO:0005524
Seca9g03377 622 Gene3D Phosphorylase Kinase; domain 1 324 423 - -
Seca9g03377 622 CDD STKc_IRAK 354 622 - -
Seca9g03377 622 ProSiteProfiles Protein kinase domain profile. 348 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03377 622 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Seca9g03377 622 ProSiteProfiles Gnk2-homologous domain profile. 137 246 IPR002902 -
Seca9g03377 622 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 319 423 - -
Seca9g03377 622 FunFam Cysteine-rich receptor-like protein kinase 10 140 246 - -
Seca9g03377 622 SUPERFAMILY Protein kinase-like (PK-like) 333 619 IPR011009 -
Seca9g03377 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03377 Seca-Chr9 47513489 47516511 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03377 15 622 Receptor kinase-like Gene Family AT4G05200 45.338 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca9g03377 Pkinase 7.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03377 - - cam:101500396 949.503