Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03375 ATGAATGTGTCATCAATTCCAGTTGCTGAAGGTGTAGAGAAATGGGTCAACGATATTCACAACAATATTGTGCAACATGGAAAAGATTGTGTTGTTGACTATGCACCACAATTGGGAATGGAGTTTGAATCAGAGGTTGTGGCCTATAAATTTTACAATGAGTATAGTAAGAGAGTTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGCAAAAAAGAAGGAATTTTGACTTCAAGAAGATTCTCATGCTTCAAGGAGGGTAAACGAAGCGTTGACAAACGTGACCACTTGACAAAAGAGCCTAGAGCAGAAACCAGAACAGGATGTGAAGCACGTATGGTTATTTCACTTGATCGGAAGATAGGGAAATACAAGGTTATTGACTTTGTAGCTCAACATAATCACCCTCTTCAATCTCCAGAATATGCCTATATGATTCGCTCTCATCGAAATATTTCTGAGTCACAAGCATCACAAATTGTATTGGCGGATGAATCTGGGTTAAAACCAAAAGATTTTCATGAATATGTGTCCAAGCAAGTTGGTGGAATAAACAATGTTGGTTATACAAGGACTAAAAGGAATCAGTCTTTAAGGTATGGTGAAGTTGGTGCATTGTTGATGTACTTCAAACAACGAAGTGAAAATCCTTCATTCTTTTATGACTTTCAAATGGATGTTGAAGAGCAAATAACAAATATATTTTGGGCAGATGCACAAATGATAAATGATTATGGATACTTTGGTGATGTCATCACTTTTGACACCACATACAAGACAAATAAGGATTACCGACCCCTAGGAGTATTTGTTGGGCTTAATAATCATAGGCAAACAATTGTTTTTGGGGCAACATTGCTATATGATGAAACCATCCCTTCTTTTCAATGGTTATTTGAAACTTTCCTCAAAGCAATGGGTGGAGAAAAGCCTAAAACAATTCTAACAGATCAAGATGCAGCAATGGCAAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTATGCACTTGGCATATTAGAGAAAATGCCCTAAGACATGTGAACCATCTTTATCAAAAGAGTTCACAATTTTGCTCAGATTTTGAAGCATGCATTGATCTACATGAGGAGGAAGGTGAATTTCTGAATGCATGGAATGATTTACTTGTTGATCATAATGTTTCCGATGACTCATGGCTACATGGGATTTTTCGAGTGAAGGAAAAGTGGGCATGGGCTTATGTTCGAAAAACTTTCACGGCAGGTATGAGATCAACTCAATTAAGTGAGAGCTTTAATGCTGATCTGAAAAACCATTTGAAGTCAGATTTAAATTTGGTACAATTTTTCACACACTTTGAAAGAGTTGTAAATGGAAAAAGGAACAATGAGTCAGAAGCCGAATATGAGTCAAGACATAAGCTTCCTAGATTGAAAATGAAGAAGGCCCCTATGCTTGTGCAAGCTGGAAACATTTACACTCCAAAGCTTTTTCAGGAGTTCCAAGAGGAATATGAGGAATTTCAAGGCACTTGCATAAAGGAATTGAAAGAAGGGTTCTATATTGTTACAAATTATGATAACATTAAGGAACGGATAGTAGTGGGGAATGTGGTGGATCAAAAGGTTACATGTGATTGTCGGAAATTTGAGACTCATGGTATCTTATGCAGTCATGCTTTGAAAGTTTTGGATGTGATGAATATCAAGTTAATTCCTCAGCACTATATACTAAAGCGATGGACAAGAGATGCAAGGTTGGGAAGTAACCGAGATTGGAAAGGACAACATATTGAGTTGGACATAAAAGCCCATTTCACGAAGAGATATAATGCGTTATGTCCTCGAATGATTAAATTGACAGATAGAGCATCTGAATCTCATGAAACATATACCTTTTTGTCCAAAGTTTGTGAAGAGTCCAACAAAATAATTAATGTTATGTTGGCTGCAACATCTATGGGTGGAGAATCAATGGGAAAGTGTGATGTATCCATATCAATTGCAAATGAGAAAATTGACAACAATGTGAACAACATTGATTTTGGTGGGGCGAAAGGCATAAAGAAGCGAGATTCCTCACATAAGGGTAAAAAACGACCTAAATCTTGGGTTGAGAAGTTGGCTCGAAAAAGAAAGGCAAACCTAGCACAAAAAAAAGAGAAAGACTCAAGAAAATTTGGTAATTTATTGCTTACTTTCTTTTTTTTGAATGAGTTATCAATTTCCTTATTATACATGTTACTTATACTATAA 2247 0.3623 MNVSSIPVAEGVEKWVNDIHNNIVQHGKDCVVDYAPQLGMEFESEVVAYKFYNEYSKRVGFGIRREYGNKSKKEGILTSRRFSCFKEGKRSVDKRDHLTKEPRAETRTGCEARMVISLDRKIGKYKVIDFVAQHNHPLQSPEYAYMIRSHRNISESQASQIVLADESGLKPKDFHEYVSKQVGGINNVGYTRTKRNQSLRYGEVGALLMYFKQRSENPSFFYDFQMDVEEQITNIFWADAQMINDYGYFGDVITFDTTYKTNKDYRPLGVFVGLNNHRQTIVFGATLLYDETIPSFQWLFETFLKAMGGEKPKTILTDQDAAMAKAISLVMPETFHGLCTWHIRENALRHVNHLYQKSSQFCSDFEACIDLHEEEGEFLNAWNDLLVDHNVSDDSWLHGIFRVKEKWAWAYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLVQFFTHFERVVNGKRNNESEAEYESRHKLPRLKMKKAPMLVQAGNIYTPKLFQEFQEEYEEFQGTCIKELKEGFYIVTNYDNIKERIVVGNVVDQKVTCDCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTRDARLGSNRDWKGQHIELDIKAHFTKRYNALCPRMIKLTDRASESHETYTFLSKVCEESNKIINVMLAATSMGGESMGKCDVSISIANEKIDNNVNNIDFGGAKGIKKRDSSHKGKKRPKSWVEKLARKRKANLAQKKEKDSRKFGNLLLTFFFLNELSISLLYMLLIL. 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03375 748 Pfam FAR1 DNA-binding domain 50 139 IPR004330 -
Seca9g03375 748 SMART 26again6 540 567 IPR006564 GO:0008270
Seca9g03375 748 Pfam MULE transposase domain 252 346 IPR018289 -
Seca9g03375 748 Pfam SWIM zinc finger 538 562 IPR007527 GO:0008270
Seca9g03375 748 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 30 640 IPR031052 GO:0006355
Seca9g03375 748 ProSiteProfiles Zinc finger SWIM-type profile. 517 565 IPR007527 GO:0008270
Seca9g03375 748 ProSiteProfiles WRKY domain profile. 65 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03375 Seca-Chr9 47505810 47508186 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g03375 MULE 9e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03375 - - tpra:123895462 1115.52