Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03374 ATGCCTTCGTTGAAGCTTGTGTTGCTGTTTACCGCTGTTAGCTTCATCAGCTTTGGTAGTATCAAAGCACAGGATGCTCCTGTCTATCTTCACAAAAACTGCTCAACTAACAGCACTACCACCGCCAACAGTGCCTTCCAACTCCACCTCAAGACCCTCCTCTCTTCCCTCTCTTCCAACGCCACCGCCACCACCGAATTCTACAACACCACCGTCACCGGAAGATCCCCCTCCGACACGGTGTATGGACTTTTCATGTGCCGTGGTGACGTGGCACCTGCGCTGTGTCGACAATGTGTTGTGAACGCAACTCAGCGACTTGTCTCAGATTGCTCTTTGTCCAAACAAGCTGTGATATGGTACGACGAGTGCACGGTGCGCTACTCCAACCGCTCTTTCTTTTCCACGGTGGACACGAGGCCTCGCCTTGGCCTCCTCAACACCGCAAATATCTCCAATCAGGAAAACTTCATGCGTTTGCTCTTCCAAACAATAAACAAAACTGCTGATGAGGCTGCCAATTCTTCTATTGGTACTAAGAAATATGCAACGAACCAAGCGACCATTTCTGGGTTTCAGTCACTCTACTGTTTGGCACAGTGCACGCCTGATCTCTCACCCCAAGATTGCAGAAGGTGTCTCAGTGGCGTCATAGGAGACCTTCCTTGGTGCTGTCAAGGAAAACAGGGTGGAAGGGTTCTTTATCCTAGCTGCAATGTTAGGTATGAGCTTTACCCTTTCTATCGCAACTCTACTTCGCCATCGCCAACGCCAACGCCAACGCCAACGCCCTCACCGCCACTTCTTGTTCCTCCTACGGCTGCTGCCAATTCGGGAGGAAACAGTGGGATCTCAGCAGGGACTATTATTGCAATTGTTGTTCCAATAACAGTCGCTGTGCTTCTATTTATCGTCGGCGTTTGTTTCTTGACTAGAAGAACTAGGAAGAAGCATGACTCTGTACCAGAGGGAAAGAGTAAGGATCCTCGTGTCGTGTGTGAATTGAAAACTGCATATGACATCAGCACTGTGGAGTCCTTGCAATTCGATTTTGGCACAATTGAAGCCGCTACAAACAAATTCTCTGTAGATAACAAGCTGGGTGAAGGTGGATTTGGTGAGGTTTACAAGGGCACTCTTCCAAGCGGGCAACAAATAGCTGTCAAGAGACTCTCCAAAAGTTCTGGGCAAGGTGGAGAAGAATTTAAGAATGAAGTGGTGGTGGTTGCCAAGCTTCAACACAGAAATTTGGTGAGGCTTCTGGGATTTTGCTTGCAAGGAGAAGAAAAGATACTTGTTTATGAATATGTGCTCAACAAAAGTCTTGACTATACAATTTTTGATCCTGAAAAGCAAAGGGAGTTGGATTGGGCAAGGCGTTACAAGATTATTGGAGGAATTGCTAGAGGCATTCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACATCGTGATCTCAAAGCTAGTAACATATTGTTGGATGGAGATATGAATCCAAAAATCTCAGATTTTGGCATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAACACCAGCAGAATTGTAGGGACTTATGGTTACATGTCTCCAGAGTATGCAATGCATGGAGAGTTCTCTGTTAAGTCTGATGTGTACAGCTTCGGAGTTCTCATTTTGGAGATTATAAGTGGCAAGAAGAATAGCTCTTTCTATCAAACAGACGGTGCTGAGGATCTAATGAGCTATGCTTGGACACTTTGGAAGGATGGAGCACCATTGGAACTGATGGACCCCATATTAAGGGAATCCCATACCCCAAATGAAGTTATCAGAAGCATCCATATTGGTTTGCTCTGTGTCCAAGAAGATCCAGCAGACAGGCCAACAATGACAGAAATAGTTCTTATGCTAGACAGTAACACTGTTACTCTACCAACTCCCAAGCAGCCTGCATTTTTCATTCATAGTGGAACTGATCCAAACATGCCAAAGGTGAAATTTGACCAATCAATACCAATGTCTATGAATGAGATGTCGATTAGTGAAATGGATCCTAGATAA 2046 0.4516 MPSLKLVLLFTAVSFISFGSIKAQDAPVYLHKNCSTNSTTTANSAFQLHLKTLLSSLSSNATATTEFYNTTVTGRSPSDTVYGLFMCRGDVAPALCRQCVVNATQRLVSDCSLSKQAVIWYDECTVRYSNRSFFSTVDTRPRLGLLNTANISNQENFMRLLFQTINKTADEAANSSIGTKKYATNQATISGFQSLYCLAQCTPDLSPQDCRRCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRNSTSPSPTPTPTPTPSPPLLVPPTAAANSGGNSGISAGTIIAIVVPITVAVLLFIVGVCFLTRRTRKKHDSVPEGKSKDPRVVCELKTAYDISTVESLQFDFGTIEAATNKFSVDNKLGEGGFGEVYKGTLPSGQQIAVKRLSKSSGQGGEEFKNEVVVVAKLQHRNLVRLLGFCLQGEEKILVYEYVLNKSLDYTIFDPEKQRELDWARRYKIIGGIARGIQYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGMARIFGVDQTQGNTSRIVGTYGYMSPEYAMHGEFSVKSDVYSFGVLILEIISGKKNSSFYQTDGAEDLMSYAWTLWKDGAPLELMDPILRESHTPNEVIRSIHIGLLCVQEDPADRPTMTEIVLMLDSNTVTLPTPKQPAFFIHSGTDPNMPKVKFDQSIPMSMNEMSISEMDPR. 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03374 681 Gene3D Transferase(Phosphotransferase) domain 1 438 641 - -
Seca9g03374 681 ProSiteProfiles Protein kinase domain profile. 361 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03374 681 SUPERFAMILY Protein kinase-like (PK-like) 346 653 IPR011009 -
Seca9g03374 681 FunFam Cysteine-rich receptor-like protein kinase 25 141 247 - -
Seca9g03374 681 ProSiteProfiles Gnk2-homologous domain profile. 28 133 IPR002902 -
Seca9g03374 681 CDD STKc_IRAK 367 633 - -
Seca9g03374 681 FunFam cysteine-rich receptor-like protein kinase 10 437 639 - -
Seca9g03374 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Seca9g03374 681 MobiDBLite consensus disorder prediction 253 271 - -
Seca9g03374 681 Gene3D Phosphorylase Kinase; domain 1 326 436 - -
Seca9g03374 681 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 27 132 - -
Seca9g03374 681 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 680 - -
Seca9g03374 681 ProSiteProfiles Gnk2-homologous domain profile. 139 247 IPR002902 -
Seca9g03374 681 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Seca9g03374 681 FunFam Cysteine-rich receptor-like protein kinase 10 324 436 - -
Seca9g03374 681 MobiDBLite consensus disorder prediction 251 274 - -
Seca9g03374 681 Pfam Protein tyrosine and serine/threonine kinase 363 631 IPR001245 GO:0004672|GO:0006468
Seca9g03374 681 Gene3D - 27 133 IPR038408 -
Seca9g03374 681 Gene3D - 142 247 IPR038408 -
Seca9g03374 681 SMART serkin_6 361 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g03374 681 Pfam Salt stress response/antifungal 34 130 IPR002902 -
Seca9g03374 681 Pfam Salt stress response/antifungal 150 245 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03374 Seca-Chr9 47495309 47498700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03374 7 681 Receptor kinase-like Gene Family AT4G05200 51.820 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca9g03374 PK_Tyr_Ser-Thr 9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03374 - - gmx:100305391 1042.34