Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03369 ATGGATACCCAAGAATCTCTGTTAGTATTAGACAATCCCAGAAAACCCATTTCCAAAACTCTGTGGTTACTCCTCTCTGTAGCTTCTGTTGTATGCTCATCAGTTCTTCTTGCTTCTTATGTCATCAAACCCACCTCCTTGCCTCATCACCATGCCTGTGAACATGCACTTGATACACCATCCTGCTTAGCCCATGTCTCGCAACTAACTCAAGGCCCGATCTTCACCAGTACTAACAAATTCAATTTGCTCCGATCCTTCCTAATGAAGTCCACCTCACACATTCAGAAAGCTATGGACACAGCCAATGCTATAAAACTCAAGATTAACAATCCGAAGGAGGAAGCAACTTTGCACAACTGTGAACAGCTGATGGACTTGTCCATGGATAGAGTTTGGGACTCAATGATGGCTCTAACAAAAGAGGCCACTGATTCGCTGCAAGATGCACACACGTGGGTAAGCAGTGTGCTCACTAACCATGTCACTTGCTTGGATGGATTAGAGGGCTCAGCTCGGGCCTTGATGGAGGCCCAGCTTCAGGAACTGATATCCAGAGCAAGGACCTCCCTGGCCTTGCTTGTTCATGTTTTGCCCACAAATCCAGACCTCATTGATGAGCCACTCAATATTGGGGATTTCCCCTCATGGGTTACAAGCAAGGATCGGAGGCTTTTGGAGTCTTCAGCTGGGGAGATCAAGCCCAATGTTGTGGTGGCTAAGGATGGGAGTGGCAAGTTCAAGACTGTTGCTGAGGCTGTGGCATCCGCACCCGACAACAGTAAGACAAGGTACGTTATCTATGTCAAGAAGGGAACTTACAAAGAAAATGTTGAAATTGGTAAGAAAAAGAAGAATGTGATGCTTGTGGGTGAAAGTATGGATGCAACGATAATCACCGGCAACTTGAATTATATCGATGGAACAGGCACCTTTGATACTGCCACTGTTGCTGCTGTTGGAGATGGGTTTATAGCCCAGGACATATGGTTCCAAAACACAGCAGGCCCACAGAAGCATCAGGCAGTGGCTCTCCGCGTCGGCGCTGACATGTCCGTCATAAACCGCTGCCGCATTGACGCCTATCAAGACACTCTCTACGCCCACAGTAACAGGCAGTTCTACCGTGACTCTTACATTACCGGAACAGTTGATTTCATCTTTGGAAATGCAGCTGTGGTCTTCCAAAAGTGCAAGCTGGTGGCCCGAAAGCCCATGGATAACCAGAAAAACATGATCACGGCCCAAGGACGAATAGATCCAAACCAGAACACAGGAACATCAATTCAGCAATGTGACCTGACACCAAGCTCAGATCTTAAGCCCGTTGTGGGCTCAATAAAAACTTATCTGGGCCGCCCATGGAAGAATTTCTCTAGAACCGTTGTGATGCAATCCTTTCTGAGCACTCATATTGACCCAACAGGATGGGCAGAATGGGATGCCGAGCATAAGGACTATTTGAAAACGTTATATTATGGAGAATACATGAACAAAGGGCCTGGTGCTGGTATAAGCAAGAGAGTGAATTGGCCCGGTTACCATGTCATCAAAAGTGCAACAGAGGCAAGTAAGTTTACAGTAACACAGCTCATCCAAGGTAATGTTTGGTTGAAGGACACGGGGGTGAACTACATAGAGGGCCTGTAG 1650 0.4691 MDTQESLLVLDNPRKPISKTLWLLLSVASVVCSSVLLASYVIKPTSLPHHHACEHALDTPSCLAHVSQLTQGPIFTSTNKFNLLRSFLMKSTSHIQKAMDTANAIKLKINNPKEEATLHNCEQLMDLSMDRVWDSMMALTKEATDSLQDAHTWVSSVLTNHVTCLDGLEGSARALMEAQLQELISRARTSLALLVHVLPTNPDLIDEPLNIGDFPSWVTSKDRRLLESSAGEIKPNVVVAKDGSGKFKTVAEAVASAPDNSKTRYVIYVKKGTYKENVEIGKKKKNVMLVGESMDATIITGNLNYIDGTGTFDTATVAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADMSVINRCRIDAYQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKCKLVARKPMDNQKNMITAQGRIDPNQNTGTSIQQCDLTPSSDLKPVVGSIKTYLGRPWKNFSRTVVMQSFLSTHIDPTGWAEWDAEHKDYLKTLYYGEYMNKGPGAGISKRVNWPGYHVIKSATEASKFTVTQLIQGNVWLKDTGVNYIEGL. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03369 549 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 197 IPR035513 -
Seca9g03369 549 ProSitePatterns Pectinesterase signature 1. 261 280 IPR018040 -
Seca9g03369 549 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Seca9g03369 549 FunFam Pectinesterase 230 549 - -
Seca9g03369 549 Pfam Plant invertase/pectin methylesterase inhibitor 51 185 IPR006501 GO:0004857
Seca9g03369 549 Gene3D - 230 549 IPR012334 -
Seca9g03369 549 SMART PMEI_2 43 193 IPR006501 GO:0004857
Seca9g03369 549 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 193 IPR035513 -
Seca9g03369 549 NCBIfam pectinesterase inhibitor domain 26 173 IPR006501 GO:0004857
Seca9g03369 549 SUPERFAMILY Pectin lyase-like 234 548 IPR011050 -
Seca9g03369 549 Pfam Pectinesterase 236 535 IPR000070 GO:0030599|GO:0042545
Seca9g03369 549 PANTHER PECTINESTERASE 35 539 - -
Seca9g03369 549 CDD PMEI-like_4 55 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03369 Seca-Chr9 47448331 47450365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03369 9 549 Carbohydrate Esterase AT1G11580 55.315 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03369 K01051 - gmx:100815836 844.728