Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g03362 ATGGAATTGAAAATTCACATATTCTCTCTGCAGTATAGTCGTGTATCACTGGGTCAGGTATCTGGATTCCAGAATCAAATAAATCAGAGTCTGGGCTCTGGTCAACATATTGATGCTTGGAAGATTTCTAATCATCCATCTAATTCTACACAACATCTGTTTAATATTAGGGGAGGAGGAAGGAGTCTTCTGATGCCTCCAATTGATAACATTCCCAATACTGATGTACATTCTTATGGGACTCGACTGGCTGTGTCAAGGATGGTTCCTGGTCTCAAGTCTAATGTGGAGGGTTCTCCGCCAATTTTGCCAGCTACTTTTGAAATGAGGCCCTCTTTAAATGTACATGCTGCTCGTCCTCCCAGTTTAAATCCTATATTTCCATTGAAAAATCTTGGTAGGAGTCAATTTGAATCAATAAATGCTAATAATACCATTATGAGTCATGGTCCAAATAAATCTTTGCTTATGCGTGAACAATCATTGCACAATGTTGAGAACAAAGATATCAGTAAAGGAAACCTACATCATTTGCCTAATCAGCTAGCTGGCCTGATTTCATCTAACCCGCAAAACCGTGGACAATCACCACAACCACAGTTTTTTCCATCTCAGGATCCAGCAGGATCACAATTTAGTTGTGGGAGCTCTTTGCAAGGACATGGTGCTGCTATAATTACACCCATGTCAAATGTGCCACCTGTTATGCCATTCCCTTTACCCGGCCAAAGTATTGCAAATAACTCTTTACATTCACAGGGGGGAACCTTGCCACCTTTACCTCCAGTGCGCCCTCCTGCTTCATCACAGATGTTACCTCACCCTAATCCTAGTCCTTTTGTGTCAAGTCAACAGCCAACTGTTGCATATTCTAATTTGATTAATACACTCATGGCCCAAGGTGTAATCTCATTGACCAATCAGGCCCCTGTACAGGATTCTGTTGGAATTGAGTTTAATCCAGATATGCTGAAGGTACGGCATGAATCTGCAGTCAGTGCCTTGTATGGTGATCTCCCTAGACAATGCACAACTTGTGGTCTCCGATTCAAATGCCAAGATGAGCACAGTAATCATATGGATTGGCATGTGACGAAGAACCGGATGTCTAAAAACCGTAAGCAGAAGCCTTCTCGTAAATGGTTTGTGAGTGAAAGGATGTGGCTCAGTGGTGCAGAGGCATTGGGAACGGAATCAGTTCCAGGTTTTTTGCCAACTGAGACCATCGAGGAAAAGAAAGAAGATGAAGAGTTGGCTGTTCCTGCTGAAGAAGACCAGAATACATGTGCGTTATGTGGTGAGCCTTTTGATGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATATCTTAATGCACCCAAGGGAACAACAGGAGGCATGGACAGGTCACAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTGAATCTAGTACGGCCCCATCTGAAGATATTGGGCTGGATGAAGGGGGAACCTTTGAGGAAGGCAATCAAAGAAAACGAATGCGGAGTTGA 1530 0.4307 MELKIHIFSLQYSRVSLGQVSGFQNQINQSLGSGQHIDAWKISNHPSNSTQHLFNIRGGGRSLLMPPIDNIPNTDVHSYGTRLAVSRMVPGLKSNVEGSPPILPATFEMRPSLNVHAARPPSLNPIFPLKNLGRSQFESINANNTIMSHGPNKSLLMREQSLHNVENKDISKGNLHHLPNQLAGLISSNPQNRGQSPQPQFFPSQDPAGSQFSCGSSLQGHGAAIITPMSNVPPVMPFPLPGQSIANNSLHSQGGTLPPLPPVRPPASSQMLPHPNPSPFVSSQQPTVAYSNLINTLMAQGVISLTNQAPVQDSVGIEFNPDMLKVRHESAVSALYGDLPRQCTTCGLRFKCQDEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESVPGFLPTETIEEKKEDEELAVPAEEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPKGTTGGMDRSQLGPIIHAKCRSESSTAPSEDIGLDEGGTFEEGNQRKRMRS. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g03362 509 MobiDBLite consensus disorder prediction 184 217 - -
Seca9g03362 509 MobiDBLite consensus disorder prediction 258 273 - -
Seca9g03362 509 MobiDBLite consensus disorder prediction 478 509 - -
Seca9g03362 509 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 110 494 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Seca9g03362 509 ProSitePatterns Zinc finger C2H2 type domain signature. 343 363 IPR013087 -
Seca9g03362 509 MobiDBLite consensus disorder prediction 243 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g03362 Seca-Chr9 47335548 47338478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g03362 281 509 C2H2 Transcription Factor Family AT4G04885 70.306 5.15e-112 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g03362 K14400 - gmx:100794796 686.411